BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3026.p         (56 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1842 [S] COG4890 Predicted outer membrane lipoprotein Vch Vibr...    46   3e-05
BMEII0758 Non COG                                                      41   6e-04
STM0742 [S] COG4890 Predicted outer membrane lipoprotein Sty Sal...    39   0.002
PA4072 [E] COG0531 Amino acid transporters Pae Pseudomonas aerug...    30   1.5  
SMc00583 [R] COG0795 Predicted permeases Sme Sinorhizobium meliloti    27   9.6  

>VC1842 [S] COG4890 Predicted outer membrane lipoprotein Vch Vibrio
          cholerae
          Length = 35

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 22/25 (88%)

Query: 1  MWYFAWILGIGLALAFGIINVMWLE 25
          MWYFAWILG+ LA AFGIIN +WLE
Sbjct: 1  MWYFAWILGVLLACAFGIINALWLE 25


>BMEII0758 Non COG
          Length = 51

 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 1  MWYFAWILGIGLALAFGIINVMWLE--ANYAFGRRKAEETHE 40
          MWYF+W+LG+ LA AF ++N MW E   + A  R  A+ T E
Sbjct: 1  MWYFSWLLGLPLAAAFAVLNAMWYELMDDRARKRLAADPTAE 42


>STM0742 [S] COG4890 Predicted outer membrane lipoprotein Sty Salmonella
          typhimurium LT2
          Length = 37

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 1  MWYFAWILGIGLALAFGIINVMWLEANYAFGRRKAEET 38
          MWYFAWILG  LA AFGII  + LE   A G+   EE+
Sbjct: 1  MWYFAWILGTLLACAFGIITALALEHVEA-GKTGQEES 37


>PA4072 [E] COG0531 Amino acid transporters Pae Pseudomonas aeruginosa
          Length = 496

 Score = 30.0 bits (66), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)

Query: 5   AWILGIGLALAFGIINVMWLEANYAFGR 32
           AW++G+G+ L FG++N + +    AFGR
Sbjct: 136 AWLVGVGMVLCFGLLNALGIT---AFGR 160


>SMc00583 [R] COG0795 Predicted permeases Sme Sinorhizobium meliloti
          Length = 360

 Score = 27.3 bits (59), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 1   MWYFAWILGIGLALAFGIINVMWLEANYAFGRRKAEETHERFASARAA 48
           +W F     +G AL FG++ V+ +    A+G +KAE     + S R+A
Sbjct: 99  VWQFLRPFVVG-ALLFGVLAVVVINPLAAWGTKKAEALEAEWGSTRSA 145