BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3024.p (540 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1844 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 ... 736 0.0 cydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Ec... 729 0.0 ZcydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 E... 729 0.0 ECs0768 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1... 729 0.0 STM0740 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1... 726 0.0 >VC1844 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Vch Vibrio cholerae Length = 541 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/525 (65%), Positives = 429/525 (81%), Gaps = 1/525 (0%) Query: 2 VPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKL 61 V + +VV LSRLQFA+TA+YHFLFVPLTLG++++L IMES+YVMT QIYKDMT+FWGKL Sbjct: 12 VTMIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKL 71 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGW 121 FGINFA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIE L+AFF+ESTFVGLFFFGW Sbjct: 72 FGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGW 131 Query: 122 DKLSRKQHLIVTVLVAVGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 D+LS++QHL+VT LVA+GSN SALWIL+ANGWM NPVG+EFNFETMRME+VS DV+ NP Sbjct: 132 DRLSKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNP 191 Query: 182 VAQVKFVHTVAAGYVTASMFVLGISAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLG 241 VAQVKFVHTVAAGY T +MF+LGISA+YLLK RD AFA RSFA+AA FG+A+ LSVIVLG Sbjct: 192 VAQVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLG 251 Query: 242 DESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNEKEQRTDYAVKIPYVLGLIGTR 301 DESGY GEV +VKLAAIE+EW T PAPA TLFG+PN++E RTDYA+KIP+ LG+I TR Sbjct: 252 DESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATR 311 Query: 302 SVDTQVLGIKDLKKENEVRIRNGMLAYAALTKLKSGDKSPEARADFNKLKKDLGYGLLLK 361 S+D QV+G++DL+ E+ RIR G+ AY L +L++G+K+PE A F+++K DLGYGLLLK Sbjct: 312 SLDEQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLK 371 Query: 362 KYTNNVVDATPEQIALAVDDTIPKVAPMFWSFRGMVGLGFLFLFIFAASFWFLAKKQLAP 421 +YT+ V DAT EQI A DD+IP V P+FWSFR MV GF+ L +F A+F ++++ Sbjct: 372 RYTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQ 431 Query: 422 QRWLLRLAVIAIPLPWIAAELGWVVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGF 481 ++W+L+ A+ +IPLPWIA E GW VAEYGRQPW + ILP +++AS+L G + S+ Sbjct: 432 KKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAI 491 Query: 482 ILFYTFLLVVEMILMVKYARLGPSSLHTGKYYWESKNQDSGPDDV 526 + YT L+ E+ LMVK+ R GPSSL TG+Y++E + +S D V Sbjct: 492 LALYTIFLIAEVYLMVKFTRKGPSSLKTGRYHFE-QGAESVQDQV 535 >cydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Eco Escherichia coli K12 Length = 523 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/518 (65%), Positives = 420/518 (81%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 4 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 63 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+L Sbjct: 64 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLG 123 Query: 126 RKQHLIVTVLVAVGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVA+GSNLSALWIL+ANGWM NP+ ++FNFETMRME+VS ++++ NPVAQV Sbjct: 124 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQV 183 Query: 186 KFVHTVAAGYVTASMFVLGISAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LGISAWY+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 184 KFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 243 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNEKEQRTDYAVKIPYVLGLIGTRSVDT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P+++E+ +A++IPY LG+I TRSVDT Sbjct: 244 YEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDT 303 Query: 306 QVLGIKDLKKENEVRIRNGMLAYAALTKLKSGDKSPEARADFNKLKKDLGYGLLLKKYTN 365 V+G+K+L ++E RIRNGM AY+ L +L+SG R FN +KKDLGYGLLLK+YT Sbjct: 304 PVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 363 Query: 366 NVVDATPEQIALAVDDTIPKVAPMFWSFRGMVGLGFLFLFIFAASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAP++++FR MV GFL L I A SFW + + ++ ++WL Sbjct: 364 NVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 423 Query: 426 LRLAVIAIPLPWIAAELGWVVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 424 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLY 483 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGKYYWESKNQDSGP 523 T LV E+ LM K+ARLGPSSL TG+Y++E + + P Sbjct: 484 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQP 521 >ZcydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 EcZ Escherichia coli O157:H7 EDL933 Length = 523 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/518 (65%), Positives = 420/518 (81%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 4 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 63 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+L Sbjct: 64 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLG 123 Query: 126 RKQHLIVTVLVAVGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVA+GSNLSALWIL+ANGWM NP+ ++FNFETMRME+VS ++++ NPVAQV Sbjct: 124 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQV 183 Query: 186 KFVHTVAAGYVTASMFVLGISAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LGISAWY+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 184 KFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 243 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNEKEQRTDYAVKIPYVLGLIGTRSVDT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P+++E+ +A++IPY LG+I TRSVDT Sbjct: 244 YEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDT 303 Query: 306 QVLGIKDLKKENEVRIRNGMLAYAALTKLKSGDKSPEARADFNKLKKDLGYGLLLKKYTN 365 V+G+K+L ++E RIRNGM AY+ L +L+SG R FN +KKDLGYGLLLK+YT Sbjct: 304 PVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 363 Query: 366 NVVDATPEQIALAVDDTIPKVAPMFWSFRGMVGLGFLFLFIFAASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAP++++FR MV GFL L I A SFW + + ++ ++WL Sbjct: 364 NVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 423 Query: 426 LRLAVIAIPLPWIAAELGWVVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 424 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLY 483 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGKYYWESKNQDSGP 523 T LV E+ LM K+ARLGPSSL TG+Y++E + + P Sbjct: 484 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQP 521 >ECs0768 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Ecs Escherichia coli O157:H7 Length = 523 Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/518 (65%), Positives = 420/518 (81%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 4 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 63 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+L Sbjct: 64 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLG 123 Query: 126 RKQHLIVTVLVAVGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVA+GSNLSALWIL+ANGWM NP+ ++FNFETMRME+VS ++++ NPVAQV Sbjct: 124 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQV 183 Query: 186 KFVHTVAAGYVTASMFVLGISAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LGISAWY+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 184 KFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 243 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNEKEQRTDYAVKIPYVLGLIGTRSVDT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P+++E+ +A++IPY LG+I TRSVDT Sbjct: 244 YEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDT 303 Query: 306 QVLGIKDLKKENEVRIRNGMLAYAALTKLKSGDKSPEARADFNKLKKDLGYGLLLKKYTN 365 V+G+K+L ++E RIRNGM AY+ L +L+SG R FN +KKDLGYGLLLK+YT Sbjct: 304 PVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 363 Query: 366 NVVDATPEQIALAVDDTIPKVAPMFWSFRGMVGLGFLFLFIFAASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAP++++FR MV GFL L I A SFW + + ++ ++WL Sbjct: 364 NVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 423 Query: 426 LRLAVIAIPLPWIAAELGWVVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 424 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLY 483 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGKYYWESKNQDSGP 523 T LV E+ LM K+ARLGPSSL TG+Y++E + + P Sbjct: 484 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQP 521 >STM0740 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Sty Salmonella typhimurium LT2 Length = 522 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/518 (66%), Positives = 417/518 (80%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 ++V LSRLQFA+TA+YHFLFVPLTLG++++L IME+VYV++G QIYKDMT+FWGKLFGIN Sbjct: 3 DIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGIN 62 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FA+GVATG+T+EFQFGTNWSYYSHYVGDIFG PLAIEGLMAFF+ESTFVGLFFFGWD+LS Sbjct: 63 FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLS 122 Query: 126 RKQHLIVTVLVAVGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QH+ VT LVA+GSNLSALWIL+ANGWM NP+ A+FNFETMRME+VS ++++ NPVAQV Sbjct: 123 KVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFNFETMRMEMVSFSELVLNPVAQV 182 Query: 186 KFVHTVAAGYVTASMFVLGISAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTVA+GYVT +MF+LGISA+Y+LK RD AFA RSFA+AA FG+AA LSVIVLGDESG Sbjct: 183 KFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESG 242 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNEKEQRTDYAVKIPYVLGLIGTRSVDT 305 Y G+V K KLAAIEAEW+T PAPA TLFG+P++ +Q A++IPY LG+I TRSVDT Sbjct: 243 YEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDKQENHLAIQIPYALGIIATRSVDT 302 Query: 306 QVLGIKDLKKENEVRIRNGMLAYAALTKLKSGDKSPEARADFNKLKKDLGYGLLLKKYTN 365 V+G+KDL ++E RIRNGM AY L +L++G R FN +KKDLGYGLLLK+YT Sbjct: 303 PVIGLKDLMVQHEERIRNGMKAYELLEQLRAGSTDQAVRDQFNSMKKDLGYGLLLKRYTP 362 Query: 366 NVVDATPEQIALAVDDTIPKVAPMFWSFRGMVGLGFLFLFIFAASFWFLAKKQLAPQRWL 425 NV DAT QI A D+IP+VAP++++FR MV GFL L I A SFW + + ++ ++WL Sbjct: 363 NVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWL 422 Query: 426 LRLAVIAIPLPWIAAELGWVVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFILFY 485 LR A+ IPLPWIA E GW VAEYGRQPW I +LPT ++ SSL G L FS+ Y Sbjct: 423 LRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICGLY 482 Query: 486 TFLLVVEMILMVKYARLGPSSLHTGKYYWESKNQDSGP 523 T LV E+ LM K+ARLGPSSL TG+Y++E S P Sbjct: 483 TLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVTSQP 520