BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3023.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all7167 [S] COG3238 Uncharacterized protein conserved in bacteri...    30   1.1  
PA0418 Non COG                                                         27   8.3  
YPO0497 [J] COG0564 Pseudouridylate synthases, 23S RNA-specific ...    27   8.4  

>all7167 [S] COG3238 Uncharacterized protein conserved in bacteria Nos
          Nostoc sp. PCC 7120
          Length = 177

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 17 LTRLPLGAEITLLLVIKIALITVLAKTFFAHPE 49
          L  +PL A+I+ L V  IALI++L   +F HP+
Sbjct: 59 LNSVPLAADISYL-VGSIALISLLCTGWFGHPD 90


>PA0418 Non COG
          Length = 471

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 12/15 (80%), Positives = 12/15 (80%)

Query: 13  QWPRLTRLPLGAEIT 27
           QWPRL RLP GAE T
Sbjct: 175 QWPRLQRLPDGAEET 189


>YPO0497 [J] COG0564 Pseudouridylate synthases, 23S RNA-specific Ype
           Yersinia pestis
          Length = 206

 Score = 27.3 bits (59), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 39  VLAKTFFAHPEAKHMQMPVQRVEQHMLSFTTPPAATAQHQDLSAK 83
           +L   F+AHPEAK M   +Q +    L  T P   T  H    A+
Sbjct: 162 ILGDGFYAHPEAKAMASRLQ-LHAQQLCITHPEFGTPMHFKCEAE 205