BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3022.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1241 [K] COG1510 Predicted transcriptional regulators Rso Ral...   261   6e-70
AGl1535 [K] COG1510 Predicted transcriptional regulators Atu Agr...   224   1e-58
BMEII0763 Non COG                                                     217   2e-56
MJ1563 [K] COG1510 Predicted transcriptional regulators Mja Meth...    60   4e-09
PH0289 [K] COG1510 Predicted transcriptional regulators Pho Pyro...    57   2e-08

>RSp1241 [K] COG1510 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 186

 Score =  261 bits (667), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 123/184 (66%), Positives = 150/184 (81%), Gaps = 2/184 (1%)

Query: 6   LSPMMQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65
           LSP+ QRF+ HFGEMGSRWGINRTVGQIYALLY     +NADEIAE L FSRSNVS+GLK
Sbjct: 3   LSPLKQRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLK 62

Query: 66  ELQSWRLVRLLHKPNDRREYFEPPGDIWEIFKVLLEERRRREIEPTLSMLRDALLEAPGN 125
           EL+SW+LVRL HKP DRREYF  P DIW IF+ L EERR+REI+PTLS+LRD +LE+PG+
Sbjct: 63  ELESWKLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPGD 122

Query: 126 KDDKEAQKRMRQMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFR--VG 183
            DD+ AQ RM++MY LI L ++WFDDVQ+L  + L  LMKMG+KV+KLL++++K    VG
Sbjct: 123 PDDRHAQARMKEMYRLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKNKLAVVVG 182

Query: 184 GASE 187
           G S+
Sbjct: 183 GKSK 186


>AGl1535 [K] COG1510 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 214

 Score =  224 bits (570), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 134/175 (76%)

Query: 6   LSPMMQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65
           LSP++Q F+ HFGEMGSRWGINRTVGQ+YALLYI  + L ADEI E L  SRSNVSM LK
Sbjct: 27  LSPLVQSFVLHFGEMGSRWGINRTVGQVYALLYISPQPLCADEIVEALGISRSNVSMSLK 86

Query: 66  ELQSWRLVRLLHKPNDRREYFEPPGDIWEIFKVLLEERRRREIEPTLSMLRDALLEAPGN 125
           ELQ+W L  L H P DRR++F  P D+W+I + L EER++REI+PTLS+LR+ L+E P N
Sbjct: 87  ELQAWNLAILKHFPGDRRDFFTTPDDVWQILRTLAEERKKREIDPTLSVLREILMETPEN 146

Query: 126 KDDKEAQKRMRQMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKF 180
           +D++ AQ+R+ +M  LIE  + W+DDV+RL  E L SL+ +GSKV KLL+ +DK 
Sbjct: 147 EDERHAQRRIDEMKTLIEQLTGWYDDVKRLETERLASLLALGSKVTKLLEAKDKI 201


>BMEII0763 Non COG
          Length = 194

 Score =  217 bits (552), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 132/179 (73%)

Query: 6   LSPMMQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65
           LSP++Q F+ HFGEMGSRWGINRTVGQIYALLY+    L ADEI E L  SRSNVSMG++
Sbjct: 3   LSPIVQSFVLHFGEMGSRWGINRTVGQIYALLYLSPEPLCADEIVEALGVSRSNVSMGIR 62

Query: 66  ELQSWRLVRLLHKPNDRREYFEPPGDIWEIFKVLLEERRRREIEPTLSMLRDALLEAPGN 125
           ELQ W LV L H P DRR++F  P D+W+I + L EER++REI+PTLS+LR+ L+E P +
Sbjct: 63  ELQGWNLVLLKHIPGDRRDFFTTPDDVWQILRTLAEERKKREIDPTLSVLREVLMEQPQD 122

Query: 126 KDDKEAQKRMRQMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFRVGG 184
             D+ AQ RM+ MY LIE  ++W+DDV++L  + L SL+ +G+KV + L+  D+    G
Sbjct: 123 DSDRYAQDRMKDMYSLIERLTNWYDDVKKLDTDRLTSLLALGAKVTRFLETTDRIVALG 181


>MJ1563 [K] COG1510 Predicted transcriptional regulators Mja
          Methanococcus jannaschii
          Length = 152

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%)

Query: 17 FGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLKELQSWRLVRLL 76
          F E+    G+N++VG +YA+LY+  + L   +I E L  S+ NVSM LK+L+    VR +
Sbjct: 15 FSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74

Query: 77 HKPNDRREYFEP 88
              +R+ Y+E 
Sbjct: 75 WIKGERKNYYEA 86


>PH0289 [K] COG1510 Predicted transcriptional regulators Pho Pyrococcus
           horikoshii
          Length = 169

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 2/121 (1%)

Query: 17  FGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLKELQSWRLVRLL 76
           F     R G +  VG IY  L++ GR ++  EIAE   +S S+VS  ++ L+   LV+ +
Sbjct: 14  FANTARRLGQSELVGYIYGALFLSGRPMSLGEIAEITGYSLSHVSSAMRVLEGVGLVQRV 73

Query: 77  HKPNDRREYFEPPGDIWEIFKVLLEERRRREIEPTLSMLRDAL--LEAPGNKDDKEAQKR 134
            KP DR+ YF    +  E       E+  R+I+ T   L  AL  LE     + +E +K+
Sbjct: 74  KKPGDRKAYFIATKNFSEWRSSAFYEKILRDIDETRENLLRALKELEHEKGSEVEEIKKK 133

Query: 135 M 135
           +
Sbjct: 134 L 134