BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3014.p (283 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF0470 [T] COG4943 Predicted signal transduction protein contain... 234 2e-61 BMEII0904 Non COG 232 9e-61 STM0468 [T] COG4943 Predicted signal transduction protein contai... 195 8e-50 ZylaB [T] COG4943 Predicted signal transduction protein containi... 192 5e-49 ECs0510 [T] COG4943 Predicted signal transduction protein contai... 192 5e-49 >XF0470 [T] COG4943 Predicted signal transduction protein containing sensor and EAL domains Xfa Xylella fastidiosa 9a5c Length = 530 Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/245 (47%), Positives = 159/245 (64%) Query: 5 AQFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLD 64 + R+AIQR +F V YQPI++L+DG CVGAEALVRW+++DG L+ PD F+ A+R + Sbjct: 277 TRLRQAIQRCEFFVCYQPIVSLSDGRCVGAEALVRWRQQDGTLILPDQFIPLAERSGLIL 336 Query: 65 AITDLVLEQIIDDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWL 124 ITD V+ + ++ L A LH+A+NV D+ SGR+L VLA L TG+ QLW+ Sbjct: 337 PITDQVIAASMRELGPLLVADRSLHIAINVSVKDIESGRLLDVLALALQDTGLYRKQLWI 396 Query: 125 EVTESSSMETLPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVISI 184 E TE S M+ RE + + R G+ + +DDFGTGYS L+YL +LP D LK+D+SF+ ++ Sbjct: 397 EATERSFMDARAAREHIVRLREAGYAVVIDDFGTGYSNLQYLQQLPLDALKIDKSFIDTV 456 Query: 185 SDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAVEF 244 D V IID+AK+LG++ +AEGVE Q YL GVD AQGW +S P+ A EF Sbjct: 457 GRDVTNTAVASHIIDIAKELGMRTIAEGVEREEQLTYLRARGVDMAQGWLFSSPLSAAEF 516 Query: 245 ARYCA 249 Y A Sbjct: 517 VDYLA 521 >BMEII0904 Non COG Length = 530 Score = 232 bits (591), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 116/241 (48%), Positives = 152/241 (63%) Query: 10 AIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDAITDL 69 AI+R++F VVYQP+I L G CVGAEALVRW+R DG ++ PD F+ A+ + + IT+ Sbjct: 272 AIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFIPIAENSKMISQITEQ 331 Query: 70 VLEQIIDDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWLEVTES 129 V+ + D+ L A LHVA+N+ A D+ GRIL V+ + GTGI Q+WLE TE Sbjct: 332 VVANTVRDLGDVLAADEALHVAINMAADDLAQGRILTVVQRAIRGTGIRTEQIWLEATER 391 Query: 130 SSMETLPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVISISDDAP 189 M+ R + +AR GH IA+DDFGTGYS L YL ELP D LK+D+SF+ ++ D+ Sbjct: 392 GFMDPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPVDTLKIDKSFISTLGTDSA 451 Query: 190 PHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAVEFARYCA 249 P+ II MAK L L IVAEG+E QA YL GV + QGW YS P+ A EF + Sbjct: 452 TSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQGWLYSPPLPAQEFIEFYK 511 Query: 250 A 250 A Sbjct: 512 A 512 >STM0468 [T] COG4943 Predicted signal transduction protein containing sensor and EAL domains Sty Salmonella typhimurium LT2 Length = 516 Score = 195 bits (496), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 101/242 (41%), Positives = 151/242 (62%), Gaps = 6/242 (2%) Query: 4 KAQFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCL 63 + + + AI ++ V YQPI++L+ G VGAEAL RWQ+ DG LSP+ F+A A++ Sbjct: 272 RHRLQDAIDNREINVHYQPIVSLSSGKIVGAEALARWQQADGTFLSPEIFIALAEQTGLT 331 Query: 64 DAITDLVLEQIIDDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLW 123 + +T L+++ + +DM L++HP H+++N+ A D+ S + +L+ L+ + I P+Q+ Sbjct: 332 EPLTRLIIDTVFEDMGSWLKSHPEQHISINLEASDLASETLPTLLSTLLNRSQISPSQIA 391 Query: 124 LEVTESSSMETLPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIS 183 LE+TE + + + R GH I +DDFGTGYS L YL L DVLK+D+SFV + Sbjct: 392 LELTEREFADPKTSAPIVARYRNAGHSIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFVDA 451 Query: 184 IS-DDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAV 242 + + PH II+MAK L LK+VAEG+ET Q +L Q GV Y QGW YS+P+ A Sbjct: 452 LEYKNVTPH-----IIEMAKTLKLKMVAEGIETARQEQWLRQHGVHYGQGWLYSKPLPAT 506 Query: 243 EF 244 F Sbjct: 507 AF 508 >ZylaB [T] COG4943 Predicted signal transduction protein containing sensor and EAL domains EcZ Escherichia coli O157:H7 EDL933 Length = 518 Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 150/244 (61%), Gaps = 6/244 (2%) Query: 6 QFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDA 65 + + AI+ + V YQPI++LA+G VGAEAL RW + DG LSPD F+ AQ+ + Sbjct: 276 RLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEP 335 Query: 66 ITDLVLEQIIDDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWLE 125 +T L++ + +DM LR HP+ H+++N+ + + S +I ++L ++ ++P Q+ LE Sbjct: 336 LTLLIIRSVFEDMGDWLRQHPQQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALE 395 Query: 126 VTESSSMETLPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVISIS 185 +TE + +++ R GH I LDDFGTGYS L YL +L D+LK+D+SFV ++ Sbjct: 396 LTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALE 455 Query: 186 -DDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAVEF 244 + PH II+MAK L LK+VAEG+ET Q +L Q GV Y QGW YS+ + +F Sbjct: 456 YKNVTPH-----IIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDF 510 Query: 245 ARYC 248 R+ Sbjct: 511 LRWA 514 >ECs0510 [T] COG4943 Predicted signal transduction protein containing sensor and EAL domains Ecs Escherichia coli O157:H7 Length = 518 Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 150/244 (61%), Gaps = 6/244 (2%) Query: 6 QFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDA 65 + + AI+ + V YQPI++LA+G VGAEAL RW + DG LSPD F+ AQ+ + Sbjct: 276 RLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEP 335 Query: 66 ITDLVLEQIIDDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWLE 125 +T L++ + +DM LR HP+ H+++N+ + + S +I ++L ++ ++P Q+ LE Sbjct: 336 LTLLIIRSVFEDMGDWLRQHPQQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALE 395 Query: 126 VTESSSMETLPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVISIS 185 +TE + +++ R GH I LDDFGTGYS L YL +L D+LK+D+SFV ++ Sbjct: 396 LTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALE 455 Query: 186 -DDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAVEF 244 + PH II+MAK L LK+VAEG+ET Q +L Q GV Y QGW YS+ + +F Sbjct: 456 YKNVTPH-----IIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDF 510 Query: 245 ARYC 248 R+ Sbjct: 511 LRWA 514