BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3009.p (3093 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM4261 Non COG 54 6e-06 ECs0542 Non COG 42 0.033 PA1874 Non COG 37 0.52 slr2046 Non COG 37 0.53 RSc0131_2 [O] COG1404 Subtilisin-like serine proteases Rso Ralst... 37 0.61 >STM4261 Non COG Length = 5559 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 118/445 (26%), Positives = 185/445 (41%), Gaps = 93/445 (20%) Query: 932 SLTLDLSTPDAPSEVKLDASSDTGRDGVAGTKFDNITSQSTPTLLVKGGSPGSVIQIWSD 991 S+ D P+ P+ ++LD SSD +G K DNIT+ + PT + PGS + I+ Sbjct: 424 SIITDTIAPEKPT-IELDDSSD------SGIKNDNITNSTLPTF-IGVAEPGSTVSIYLG 475 Query: 992 AAHTSPLGQGVVRVLPGAVSSNGA-TVTLSSMLKPGDNTVYVTITDQAGNTSADTSFKLN 1050 H LG+ +V + +G + TL++ LK G+ + T TD AG+TSA + Sbjct: 476 LKH---LGEVIV-------AKDGTWSYTLTTPLKDGEYNITATATDIAGHTSATANL--- 522 Query: 1051 YLKPFDASSKLDLDITSITPAGNNGFYRKDDVIEVTVRFDRPVFLKTGKNTSKVYVILQS 1110 PF +++ I ++G D+V T RP F + + + VI Sbjct: 523 ---PFTIDTRISYFSAEIETTNDSGIV-GDNVTNNT----RPTFTGKTEPNAIISVI--- 571 Query: 1111 DTEDGSQPQDTQTGMAVLVGGLDTDTLKFQYKVGQNVEFGTKRVFKAISLVNRDKVLEDV 1170 +++TG V+ D F + +VE F +EDV Sbjct: 572 ---------NSETGEEVIFKANDKGEWTFNF-TSDSVEGINNLTF----------TVEDV 611 Query: 1171 AGSTIETDQAKAVTGQQVMIDTIEPTKPQVSLPADIA--DGDTFSG---AAALGKGINLN 1225 AG+ K +IDTI P P VSL + +G SG A +G Sbjct: 612 AGN-------KKDFSFSYVIDTIAPVPPTVSLEDYVVLPNGIILSGNDLPALVGT----- 659 Query: 1226 AESGSTVRLVFRRAGVDVWTKSVTATGPGQSVKFSAEDLEKLGQGVVEVRATATDPAGNR 1285 AE ST+ L+ R G + V + G + +FS K QG ++ + D AGN+ Sbjct: 660 AEPKSTILLM--RDGKLYDSIEVDSNGT-WNYQFS----NKFLQGAYDIEIISQDAAGNK 712 Query: 1286 SAPSDTVQFKL----DTIAPKATV-ASNPGGALVNKSVTFVINFDEALKSAPTRNHFDVA 1340 S+ TV++ + + PKA + AS+ GA + ++ N AL T + F Sbjct: 713 SS---TVKYSFTIQTEVVPPKAELDASDDSGAKGD----WITNKHNALTLLGTADRFATV 765 Query: 1341 N----GTVNEVTPGDIANSWKISVT 1361 N G VT D +W ++ Sbjct: 766 NILIDGKTIGVTTADADGNWNFDIS 790 Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 25/180 (13%) Query: 876 DASYIQASVDSLTRFVKGKSAVDGVPLKLFAQLVDAAGNESGKVALKLPTGAGSKASLTL 935 D + +Q S+D +V ++GV + G+ + + + AG+ A+ TL Sbjct: 2856 DVNSVQLSIDGGANWVSATQGIEGVWGYTWPT---DMGDGKHTLTVMVTDRAGNTATQTL 2912 Query: 936 D------LSTPDAPSEVKLDASSDTGRDGVAGTKFDNITSQSTPTLLVKGGSPGSVIQIW 989 + LSTP + LD++ DTG G D++T+++ PT +++ VI + Sbjct: 2913 EFFIDTRLSTP----TIALDSTDDTGTPG------DDMTNRTRPTFILQN-IDSDVINVT 2961 Query: 990 SDAAHTSPLGQGVVRVLPGAVSSNGATVTLSSMLKPGDNTVYVTITDQAGNTSADTSFKL 1049 H G + G + T + GD T+ VT+ D+AGNT T + Sbjct: 2962 VSVTH-----NGTTTSFTATQGAGGWSFTPPAPWGDGDYTLTVTVEDRAGNTRPSTPLTV 3016 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%) Query: 2028 IEIDAARPPKPGVFQLDAASDAGISNADGITNVTLPSF 2065 I D P KP + +LD +SD+GI N D ITN TLP+F Sbjct: 425 IITDTIAPEKPTI-ELDDSSDSGIKN-DNITNSTLPTF 460 Score = 33.9 bits (76), Expect = 5.8, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 49/215 (22%) Query: 875 TDASYIQASVDSLTRFVKGKSAVDGVPLKLF-AQLVDAAGNESGKVALKLPTGAGSKASL 933 TD + +Q S+D +V DGV ++ LV+ + + +K AG+ A+ Sbjct: 1855 TDVNSVQLSLDGGINWVNATLTSDGVWEYIWPTDLVE----NTYTLTVKATDVAGNTATE 1910 Query: 934 TLD------LSTPDAPSEVKLDASSDTGRDGVAGTKFDNITSQSTPTLLVKG---GSPGS 984 TL+ LSTP + LD++ D +GT DN T+ TP ++ G Sbjct: 1911 TLNFIIDTTLSTP----TITLDSADD------SGTANDNKTNVKTPGFIIGGIDSDVTQV 1960 Query: 985 VIQIWSDAAHTSPLG----QGVVRVLPGAVSSNGATVTLSSMLKPGDNTVYVTITDQAGN 1040 V+Q+ D H+ + G R +PG S GD T+ VT+ D+AGN Sbjct: 1961 VVQVMRDG-HSEEVELTQTNGQWRFVPG------------SAWTDGDYTLTVTVKDEAGN 2007 Query: 1041 --------TSADTSFKLNYLKPFDASSKLDLDITS 1067 + DT +++++ + S D ++T+ Sbjct: 2008 IRHSAPLTVTIDTQITIDHIELVNDSGIPDDNLTN 2042 >ECs0542 Non COG Length = 5291 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 1226 AESGSTVRLVFRRAGVDVWTKSVTATGPGQSVKFSAEDLEKLGQGVVEVRATATDPAGNR 1285 AE G TV + F G +T +V A G ++ A DL LGQG + A+ D AGN Sbjct: 3667 AEVGQTVTVTF---GGKTYTATVAANGT-WALNVPAVDLAALGQGAQTITASVNDRAGNP 3722 Query: 1286 SAPSDTVQFKLDTIAPKATVASNPGGALVNKS 1317 T +DT+AP T+A+ G ++N + Sbjct: 3723 GQA--THALTVDTVAPTVTIATVAGDDIINNA 3752 Score = 36.6 bits (83), Expect = 0.89, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%) Query: 1765 ITDVSGNAAVMDYSGSPANASFKVDTTAPGVA-SVVVNGRSDDVGTSSGIYRVGDKVIVT 1823 + D++GN G A + VDTT+P A S+ + G SDD GTSS + D + Sbjct: 4124 VVDLAGNV------GQTATQNVVVDTTSPEAAKSITITGISDDTGTSSSDFITSDTTLTV 4177 Query: 1824 -------VSFNEDMRLNTDGGSPTLSLQVGAKSRVATYVANSANGKNLT 1865 + NE +++TD G+ +++ V A S +YV +G+ LT Sbjct: 4178 RGVLGAALGANEFAQISTDNGATWVNVTVAADSLNWSYV----DGRTLT 4222 >PA1874 Non COG Length = 2468 Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 24/130 (18%) Query: 1185 GQQVMIDTIEPTKPQVSLPADIADGDTFSGAAALGKGINLNAESGSTVRLVFRRAGVDVW 1244 G V +D+ P P V + ++G T SG A G + L +G+ + Sbjct: 905 GASVTVDSQAPAAPVV----NPSNGTTLSGTAEPGATVTLTDGNGNPI------------ 948 Query: 1245 TKSVTATGPGQSVKFSAEDLEKLGQGVVEVRATATDPAGNRSAPSDTVQFKLDTIAPKAT 1304 VTA G G +S L G V V ATA+DP GN SAP+ T +D++AP A Sbjct: 949 -GQVTADGSG---NWSFTPGTPLANGTV-VNATASDPTGNTSAPAST---TVDSVAPAAP 1000 Query: 1305 VASNPGGALV 1314 V + GA + Sbjct: 1001 VVNPSNGAEI 1010 Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 25/123 (20%) Query: 1187 QVMIDTIEPTKPQVSLPADIADGDTFSGAAALGKGINLNAESGSTVRLVFRRAGVDVWTK 1246 V +D + P P V D ++G T SG A G + L +G+ + Sbjct: 579 SVTVDAVAPATPTV----DPSNGTTLSGTAEPGSSVTLTDGNGNPI-------------G 621 Query: 1247 SVTATGPGQSVKFSAEDLEKLGQGVVEVRATATDPAGNRSAPSDTVQFKLDTIAPKATVA 1306 VTA G G ++ L G V V ATATDP+GN S+P+ +D +AP AT Sbjct: 622 QVTADGSG---NWTFTPSTPLPNGTV-VNATATDPSGNASSPA---SVTVDAVAP-ATPV 673 Query: 1307 SNP 1309 NP Sbjct: 674 VNP 676 >slr2046 Non COG Length = 1965 Score = 37.4 bits (85), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 11/102 (10%) Query: 2408 LVMVWDHLAPTVQVAVKPGNGPTRPGDLVELVFTFSEEIKDFTVDDIVVNGGTLIDFAGS 2467 L + D+ P + A++ + + GD + FTFSE + FT DI+V G+L S Sbjct: 417 LGITIDNTTPNLASAIEISDTALKIGDTATVTFTFSEAVIGFTNADIIVVDGSLSSPTSS 476 Query: 2468 --GLTRTAKFKPN-----DGNVLKGDVQVNGASYTDVVGNAG 2502 G+T TA PN + NV+ D +D+ GN G Sbjct: 477 DGGITWTATLTPNANAESNSNVITLD----NTGISDLAGNNG 514 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 121/296 (40%), Gaps = 34/296 (11%) Query: 1222 INLNAESGSTVRLVFRRAGVDVWTKSVTATGPGQSVKFSAEDLEKLGQGVVEVRATATDP 1281 N AE+ STV L +G S TA G G ++ G + A ATD Sbjct: 354 FNGTAEANSTVTLF---SGGSTQIGSTTANGSGNWTITAS----TPADGNYSITAKATDA 406 Query: 1282 AGNRSAPSDTVQFKLDTIAPK-ATVASNPGGAL-VNKSVTFVINFDEALKSAPTRNHFDV 1339 AGN S S + +D P A+ AL + + T F EA+ T V Sbjct: 407 AGNVSTASSALGITIDNTTPNLASAIEISDTALKIGDTATVTFTFSEAVIGF-TNADIIV 465 Query: 1340 ANGTVNEVTPGDIANSWKISVTPKPGVATGNIELRLKSGVASPLSDKAGNLVDTDKILAT 1399 +G+++ T D +W ++TP + + + L + + +SD AGN + Sbjct: 466 VDGSLSSPTSSDGGITWTATLTPNANAESNSNVITLDN---TGISDLAGNNGTGTTTSVS 522 Query: 1400 QAIDTMGPTASATADAGG----PVMGGLVSFTVVLSEAIPPKLWGAVGTGNFIATNGTVD 1455 A+DT+ PT ++ D P+ L ++T+ SE I A N A T+ Sbjct: 523 YAVDTIPPTLTSIDDGDDDNIVPIDTPL-TYTLTFSEDIDSTTVTADDFDN--AGTATIS 579 Query: 1456 SVTPIDGSGGLRYKVMVRPKTSSGGSGPADTTISLSLLANPDSDGALIRDALGNQI 1511 T + S G+ + V+V P TS TI L + +GA++ D GN + Sbjct: 580 IGTITETSSGV-FSVVVTPNTSG--------TIILQI-----PNGAVLSDMAGNNL 621 >RSc0131_2 [O] COG1404 Subtilisin-like serine proteases Rso Ralstonia solanacearum Length = 271 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%) Query: 2449 FTVDDIVVNGGTLIDFAGSGLTRTAKFKPNDGNVLKGDVQVNGASYTDVVGNAGVASNKL 2508 F D+ + GGTL+ A S L KF G L+ D+ NG V G +A L Sbjct: 159 FGTGDVYLGGGTLVVNAPSALNVAGKFTQLQGTTLELDIGANGQGKLSVAGLTTIAGGTL 218 Query: 2509 DIVFNRPGAITLSGISGSAPQVGETLS 2535 + F SG +P+VG+T++ Sbjct: 219 HVKF----------ASGYSPKVGDTIT 235