BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3004.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc3371 [K] COG1396 Predicted transcriptional regulators Atu Agr...    48   4e-06
CAC1578 [K] COG1396 Predicted transcriptional regulators Cac Clo...    47   9e-06
TM0656 [K] COG1396 Predicted transcriptional regulators Tma Ther...    45   5e-05
lin0796 [K] COG1396 Predicted transcriptional regulators Lin Lis...    44   1e-04
SP1130 [K] COG1396 Predicted transcriptional regulators Spn Stre...    43   1e-04

>AGc3371 [K] COG1396 Predicted transcriptional regulators Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 176

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 5  EIGSRIREIRLSNGLSQREL-GQRLQTSTGHISWLEAGKAMPGGELLLQLHREFAVDINW 63
          ++G R+R +R +  +  R++   RL  S   ++  E G+ +P  ELL   HREF V+I+W
Sbjct: 11 DLGRRLRAVRAAFDIDDRDVFASRLVISKSGLAHYERGERVPDAELLSAYHREFGVNISW 70

Query: 64 LLTG 67
          L+TG
Sbjct: 71 LVTG 74


>CAC1578 [K] COG1396 Predicted transcriptional regulators Cac Clostridium
          acetobutylicum
          Length = 110

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 6  IGSRIREIRLSNGLSQRELGQRLQTSTGHISWLEAGKAMPGGELLLQLHREFAVDINWLL 65
          IG RIR  R S   +Q  L + L  ST ++S +E GK     E L+++ +   +  +++L
Sbjct: 8  IGDRIRNSRKSKNYTQENLAEYLDVSTVYVSKIECGKTKINLETLMKICKFLNITPSYIL 67

Query: 66 TGSEPES 72
          TGS  +S
Sbjct: 68 TGSTTDS 74


>TM0656 [K] COG1396 Predicted transcriptional regulators Tma Thermotoga
          maritima
          Length = 176

 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 6  IGSRIREIRLSNGLSQRELGQRLQTSTGHISWLEAGKAMPGGELLLQLHREFAVDINWLL 65
          IG ++R++RLS GL+Q EL +R   S   IS LE+ K  P  + L ++      D+    
Sbjct: 3  IGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62

Query: 66 TGSEPESV 73
          +  E E +
Sbjct: 63 SDVEEERI 70


>lin0796 [K] COG1396 Predicted transcriptional regulators Lin Listeria
          innocua
          Length = 180

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 5  EIGSRIREIRLSNGLSQRELGQRLQTSTGHISWLEAGKAMPGGELLLQL 53
          +IG RI+ +RLS  L+Q ELG+R   + G+IS LE   + P  E L  +
Sbjct: 2  DIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAI 50


>SP1130 [K] COG1396 Predicted transcriptional regulators Spn
          Streptococcus pneumoniae TIGR4
          Length = 282

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 6  IGSRIREIRLSNGLSQRELGQRLQTSTGHISWLEAGKAMPGGELLLQL 53
          +G RI+ IRLS+G S  + G++  TS G ++  E G+ +P  E LL++
Sbjct: 8  VGERIQNIRLSHGDSMEKFGEKFNTSKGTVNNWEKGRNLPNKENLLKI 55