BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3000.p (459 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA... 304 4e-82 AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-... 300 4e-81 BMEI0169 [KE] COG1167 Transcriptional regulators containing a DN... 295 2e-79 mlr1139 [KE] COG1167 Transcriptional regulators containing a DNA... 289 1e-77 PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-... 288 2e-77 >RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 490 Score = 304 bits (778), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 170/465 (36%), Positives = 258/465 (55%), Gaps = 22/465 (4%) Query: 4 TLTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRG 63 TL L + R +I + + G R+PSIR LA + ++ T+V +E L AQG +E RRG Sbjct: 34 TLVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYERLVAQGYLESRRG 93 Query: 64 AGFFVCATPPRPKEEEERSLS---------RAMDVVWLMREQLKHDPGHLRLGDGFPPVE 114 +GF+V KE + R +DV WL+R G GF P Sbjct: 94 SGFYV-------KERQAPLPEEPPAPPASARKIDVAWLLRNMFHSAEPRKAPGIGFLPNG 146 Query: 115 WLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAATSQLVLTHGA 174 WL + + + R +G+ G+LPLRQ L +LA+ I A Q+V+T G Sbjct: 147 WLDGELIANALRALGRQNGNQFLAWGTPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGI 206 Query: 175 NQALDIVIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKA 234 Q+LD++ R +V+P D VLV +P +++++G+ GA+++G+P +GPD+ ALE ++ Sbjct: 207 TQSLDLIARQYVQPGDTVLVGDPAWFLMFGRFAAQGAQVIGVPYTTEGPDLVALEGLVQV 266 Query: 235 SGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFKPATAP--RIA 292 +P L S+ HNPT + S KA ++L+LA++Y LIVE+D + D P P R+A Sbjct: 267 R-RPKLLVINSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGHPATRLA 325 Query: 293 TLDQLRRTLYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVIL 352 +LDQLRR +YLGSFSK+++A LRVGFIACH +LA +L D K+L +++ E ER L +L Sbjct: 326 SLDQLRRVIYLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLATPEINERVLYKVL 385 Query: 353 SDGHFSRHTARLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQA 412 ++G + +H R+R RL +A D L++LG +LF M++WA D +A+A Sbjct: 386 TEGQYRKHVERVRARLDRARDGVQRSLERLGLKLFAQQGAGMFIWADTG--RDTNAIARA 443 Query: 413 LMAHHVVLAPGSIFHVETEQKVPWSRFNVGLLADTRFAAAMAELL 457 V APGS+F ++ W RFN+ D +A+ L Sbjct: 444 GHEEGYVFAPGSLFS-PSQMPSTWMRFNIATSTDPEMLRFLADQL 487 >AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 449 Score = 300 bits (768), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 163/450 (36%), Positives = 251/450 (55%), Gaps = 3/450 (0%) Query: 9 LVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRGAGFFV 68 ++ +IR++I + PG+RLPS+R LA + +TIV ++ L A G + R G+GFFV Sbjct: 1 MMANIRQRITSRSLVPGARLPSVRALAKTMQLSTSTIVEAYDRLVADGTISSRPGSGFFV 60 Query: 69 CA-TPPRPKEEEERSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRLDKFHQK 127 P + E L RA+D +W+ R+ L + G G+ P W+ L + + Sbjct: 61 AGPLAPLSLADIEPRLDRAVDPLWVSRQALDDGSALAKPGCGWLPASWMPQEALRRAMRG 120 Query: 128 VVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAATSQLVLTHGANQALDIVIRHFVR 187 + R L YGS G LPLRQ L +LA+HG++A SQ++LT QA+D++ R ++ Sbjct: 121 LARADDALLTDYGSPMGLLPLRQLLSRRLAEHGVQAGASQIMLTDSGTQAIDLLCRFLLQ 180 Query: 188 PCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGKPPLFFTQSLA 247 P D V+VD+P Y+ + L+ +IVG+P GPD+ E+ LK +P L+ T S Sbjct: 181 PGDTVVVDDPCYFNFHALLRAHRVKIVGVPYTPAGPDLPLFEQALKEH-QPRLYITNSAI 239 Query: 248 HNPTASDTSPHKAHKILQLADRYDALIVENDAFADFKPATAPRIATLDQLRRTLYLGSFS 307 HNPT + S AH++L LA++ I+E+D FADF+ APR+A D L R + +GSFS Sbjct: 240 HNPTGARLSAVSAHRLLMLAEQPGLTIIEDDIFADFETQAAPRLAAFDGLNRVVQIGSFS 299 Query: 308 KSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDGHFSRHTARLRER 367 K++SA++R GFIA R L D+K+ + + + +L+DG + +H LR+R Sbjct: 300 KTLSASVRCGFIAAPRAWVEALTDLKIATAFGGTHFSAALVLSLLTDGSYRKHVEALRQR 359 Query: 368 LAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQALMAHHVVLAPGSIFH 427 LA A A +L+ +G + PQ M+LW R P DA +AQ +A VVLAPG++F Sbjct: 360 LAAAVPEAATRLRSIGCMPWIEPQAGMFLWCRLPEGTDAADVAQRALARQVVLAPGNVFS 419 Query: 428 VETEQKVPWSRFNVGLLADTRFAAAMAELL 457 ++ + RFNV + + +A+ L Sbjct: 420 -SSQNASGFMRFNVSQMVGPQVMTVLADAL 448 >BMEI0169 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Bme Brucella melitensis Length = 484 Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 161/455 (35%), Positives = 248/455 (54%), Gaps = 4/455 (0%) Query: 5 LTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRGA 64 L + ++ IR +I + PG+RLPSIR LA +K+T+V ++ L A+G+++ RRGA Sbjct: 27 LVEKVMGIIRGRITAMSLAPGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGA 86 Query: 65 GFFVC--ATPPRPKEEEERSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRLD 122 GF+V A P R +D W+MR+ L+ + L+ G G+ P WL L Sbjct: 87 GFYVSERARQPFSLAATAPHKDRQIDPFWVMRQSLEAESRTLKPGCGWLPDGWLPQEALR 146 Query: 123 KFHQKVVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAATSQLVLTHGANQALDIVI 182 + + + R L YG G+ PLRQHL H+L + GI+ A +++LT QA+D++ Sbjct: 147 RALRTIARDDQSNLTTYGEPLGFRPLRQHLAHRLGEQGIDIAGGEILLTDSGTQAIDLIC 206 Query: 183 RHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGKPPLFF 242 R+ ++P D VLVD+P Y+ L ++VG+P GPD++A P L+ Sbjct: 207 RYLLQPGDTVLVDDPCYFNFQAVLLTHRVKLVGVPYTHSGPDLDAFANA-ATEHAPKLYI 265 Query: 243 TQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFKPATAPRIATLDQLRRTLY 302 + + HNPT +P AH++L+LA+ + +VE++ F DF P+ P +A LD R L+ Sbjct: 266 SNAGLHNPTGGIMTPATAHRLLKLAEAHGITLVEDNIFGDFHPSPTPLLAELDGFERVLH 325 Query: 303 LGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDGHFSRHTA 362 +GSFSK++SAA RVG+IA RD L D+K+ + + + +L DG + RH Sbjct: 326 IGSFSKTLSAAARVGYIAGRRDWIEGLTDLKLATSFGCNALSPQIVHALLIDGTYRRHIE 385 Query: 363 RLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQALMAHHVVLAP 422 LR RLA A ++L+ G +L+ PQ M+LWAR P D+ +A+ + VVLAP Sbjct: 386 SLRTRLADAMTLTANRLKATGLDLWTKPQGGMFLWARLPDGMDSGPVARHALEKGVVLAP 445 Query: 423 GSIFHVETEQKVPWSRFNVGLLADTRFAAAMAELL 457 G++F + RFNV AD A + E + Sbjct: 446 GNVFSPSC-TAAGFLRFNVAQSADPYIYAVLREAM 479 >mlr1139 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Mlo Mesorhizobium loti Length = 472 Score = 289 bits (739), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 168/458 (36%), Positives = 251/458 (54%), Gaps = 7/458 (1%) Query: 2 AQTLTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPR 61 A TL ++++ +IR++IA + PG+RLPSIR A +K+T+V +E L A+G + R Sbjct: 16 APTLVESVMATIRQRIAARSLTPGARLPSIRAFAQSMQVSKSTVVEAYERLAAEGAIRSR 75 Query: 62 RGAGFFVCAT-PPRPKEEEERSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVR 120 G+GF+ + P E L RA+D +W+ R+ L L+ G G+ P W+ Sbjct: 76 PGSGFYAAGSLAPLSLAEIGPRLDRAVDPLWVSRQSLDAGDEVLKPGCGWLPASWMPQAA 135 Query: 121 LDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAATSQLVLTHGANQALDI 180 L + + R AL YG+ G PLRQ L ++A HGIE + Q++LT QA+D+ Sbjct: 136 LRRALRTAARADDVALADYGTPLGLPPLRQLLARRMAGHGIEVSPEQIMLTESGTQAIDL 195 Query: 181 VIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGKPPL 240 + R + P D VLVD+P Y+ + L+ A+++G+P GPDIE + L A +P L Sbjct: 196 LCRFLIEPGDTVLVDDPCYFNFHALLRAHRAKVIGVPYTPSGPDIELFAQAL-AEHRPRL 254 Query: 241 FFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFKPATAPRIATLDQLRRT 300 + T S HNPT + SP AH++L+LAD+ D IVE+D FADF+ APR+A D L R Sbjct: 255 YITNSAIHNPTGAILSPVIAHRLLKLADQSDLTIVEDDIFADFEHTPAPRLAAFDGLNRV 314 Query: 301 LYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDGHFSRH 360 + +GSFSK++SA++R GFIA RD L D+K+ + +L DG + +H Sbjct: 315 VQIGSFSKTLSASVRCGFIAAPRDWIEGLTDLKIATTFGGGRLAAELVLTLLKDGSYRKH 374 Query: 361 TARLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQALMAHHVVL 420 LR RLA A +L+ +G + ++LW P DA ++A+ + +VVL Sbjct: 375 MDLLRARLAHAMAETVARLRAIGITPWIDQPAGLFLWCGLPDGVDAAEVARRALRDNVVL 434 Query: 421 APGSIFHVETEQKVPWSRFNVGLLADTR----FAAAMA 454 APG+ F + + + RFNV D R AAMA Sbjct: 435 APGNAFSL-SRTASHFLRFNVAQCEDQRIFKVLEAAMA 471 >PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 458 Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 163/450 (36%), Positives = 252/450 (56%), Gaps = 13/450 (2%) Query: 2 AQTLTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPR 61 ++ L Q +V + I G+R+PSIR LA ++ ++++++ ++ L A G++E R Sbjct: 10 SEPLVQQIVAGVSGWIRGNRVRAGTRIPSIRQLARENQLSQSSVIEAYDRLVALGMLESR 69 Query: 62 RGAGFFVCATPPRPKEEEERSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRL 121 G+GFFV A P + + + W Q L+LG G+ P W L Sbjct: 70 HGSGFFV-AEAPAATTDLDSEWHEGAENAW---GQFSGSSTKLKLGCGWIPDSWREVEEL 125 Query: 122 DKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAATSQLVLTHGANQALDIV 181 ++V R+ + LF Y + G LRQH+ +L I Q++ T GA+ ALD++ Sbjct: 126 SYAIRQVARSELAGLFDYSTPLGLPALRQHIQKRLRLIDIHVDPEQILTTTGASHALDLL 185 Query: 182 IRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGKPPLF 241 +R ++P D V+V+ PGYY L+ LK G +++G+PR GPD ALE L+A KP Sbjct: 186 VRTLLKPGDVVVVENPGYYNLFNLLKFHGVKMLGVPRTRHGPDTAALETILRAH-KPKFL 244 Query: 242 FTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFKPATAPRIATLDQLRRTL 301 FT S+ HNPT + SP AH++LQLA+++D IVE+D +ADF+ + R+ATLD LRR + Sbjct: 245 FTNSMYHNPTGTSLSPSVAHRVLQLAEQHDFHIVEDDIYADFQNGPSTRLATLDSLRRVI 304 Query: 302 YLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDGHFSRHT 361 YL SFSK++S +LRVG++ +L LAD+KM + S + E + +L++G + + Sbjct: 305 YLASFSKTLSCSLRVGYLIAGPELIRRLADVKMYTSIGSQRFAECVVSTMLANGSYRKLV 364 Query: 362 ARLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWAR---FPGFADAKQLAQALMAHHV 418 RLR+RL + A L G E+F P M++WAR +P FA+ + +A L V Sbjct: 365 QRLRQRLTRQMAATLRVLGDNGWEVFAEPVGGMFVWARIGDYP-FAELQAVATRL---DV 420 Query: 419 VLAPGSIFHVETEQKVPWSRFNVGLLADTR 448 +L+PGS F E E+ W R N+ +D R Sbjct: 421 LLSPGSGFSPEGEES-DWLRINIAYASDPR 449