BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2988.p (419 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3706_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting p... 272 1e-72 RSp1647_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting ... 213 6e-55 mll9515_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting ... 207 4e-53 cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting prote... 129 1e-29 ZcheR [NT] COG1352 Methylase of chemotaxis methyl-accepting prot... 125 1e-28 >PA3706_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Pae Pseudomonas aeruginosa Length = 329 Score = 272 bits (695), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/263 (51%), Positives = 185/263 (70%), Gaps = 1/263 (0%) Query: 10 LLKAAMGLDMATVGSSLIERVVRERMAALEITDDSLYLAVLQTSEAQLQALIESAVVPET 69 LLK+ +GLD ++VGS++IER VR+RM+ L + D+ Y L S ++QALIE+ VVPET Sbjct: 8 LLKSRIGLDASSVGSAVIERAVRQRMSGLALHDEDEYWMRLNGSPGEVQALIEAVVVPET 67 Query: 70 WFFRDREAIFATARLARQRLAE-QPAVPVRILSLPCSTGEEPYSLAMALQEEGVAPTQFV 128 WFFR E+ ARLA +RL +RILSLPCSTGEEPYS+ MAL + G++ F Sbjct: 68 WFFRYPESFTTLARLAFERLPSLGGGRALRILSLPCSTGEEPYSIVMALLDAGLSEYLFE 127 Query: 129 IDAYDIRTRSLEIAAAGVYGRNSFRGQDLGFRDRHFTPHEQGWQLQQEIRQQVRFAPGNL 188 +DA D+ R +E A+ GVYGRNSFRG +LGFRDRHF+ +G+QL +++R++VRF GNL Sbjct: 128 VDALDVSARVIERASLGVYGRNSFRGDELGFRDRHFSEVAEGYQLAEQVRRKVRFRCGNL 187 Query: 189 LAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPDALVFVGPAEGGILLSPR 248 L P L APYDF+FCRN+LIYF+R Q +VV++L+ L++PD +F+GPAE +L Sbjct: 188 LDPGLLAGEAPYDFVFCRNLLIYFDRPTQSEVVEVLKRLLRPDGAMFIGPAEASLLSQHG 247 Query: 249 MESAGIALAFGFRKRSSPLRPSR 271 M+ G+ L+F FR+ S R +R Sbjct: 248 MQPIGVPLSFVFRRTSEAPRGAR 270 >RSp1647_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Rso Ralstonia solanacearum Length = 255 Score = 213 bits (543), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 113/250 (45%), Positives = 150/250 (60%), Gaps = 13/250 (5%) Query: 5 PHIAELLKAAMGLDMATVGSSLIERVVRERMAAL------------EITDDSLYLAVLQT 52 P L G+D ++G++ +ER V ER A+ + Y L T Sbjct: 6 PRFEAWLSLETGIDAPSLGANALERAVLERARAMLAESSPRRPAVADAAALDAYWLRLNT 65 Query: 53 SEAQLQALIESAVVPETWFFRDREAIFATARLARQRLAEQPAVPVRILSLPCSTGEEPYS 112 + QALIE+ VVPETWFFRDREA ARLA +RL +PA +RILS+ CSTGEEPYS Sbjct: 66 WPEERQALIEALVVPETWFFRDREAFAELARLAGERLVREPARVLRILSVACSTGEEPYS 125 Query: 113 LAMALQEEGVAPTQFVIDAYDIRTRSLEIAAAGVYGRNSFRGQDLGFRDRHFTPHEQGWQ 172 AMAL + G+ P +F IDA DI R+++ A +YGRN+FRG L FRDR+F+ GWQ Sbjct: 126 AAMALLDAGIGPARFAIDAIDISGRAIDQAEHALYGRNAFRGYPLTFRDRYFSEVADGWQ 185 Query: 173 LQQEIRQQVRFAPGNLLAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPDA 232 L + +R++VRF GNL + + A YDFIFCRN L YF R+ Q + L++ + Sbjct: 186 LNERVRRRVRFTQGNLF-DETMDGEARYDFIFCRNALTYFHRDAQDHAIRRLDAQLADGG 244 Query: 233 LVFVGPAEGG 242 ++FVGPAE G Sbjct: 245 VIFVGPAETG 254 >mll9515_1 [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Mlo Mesorhizobium loti Length = 320 Score = 207 bits (527), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 117/283 (41%), Positives = 160/283 (56%), Gaps = 17/283 (6%) Query: 7 IAELLKAAMGLDMATVGSSLIERVVRERMAALEITDDSLYLAVLQTSEAQLQALIESAVV 66 I LL +GLD +VG +++ + +++RMAA IT+ Y L S +LQ LI + V+ Sbjct: 5 IETLLTETIGLDSTSVGPTVVRQAIKDRMAACRITNPQAYREHLTGSSQELQELINAVVI 64 Query: 67 PETWFFRDREAIFATARLARQRLAEQPAVPVRILSLPCSTGEEPYSLAMALQEEGVAPTQ 126 PETWFFRDREA AR AR + A +++LSLPCSTGEE YS+AMA+ + G + Sbjct: 65 PETWFFRDREAFTMLARHAR---VHKRAQSIKVLSLPCSTGEEAYSVAMAMFDAGFEAHE 121 Query: 127 FVIDAYDIRTRSLEIAAAGVYGRNSFRGQDLGFRDRHFTPHEQGWQLQQEIRQQVRFAPG 186 F ID D+ +R++ A +YGRNSFRG L F+DR+F E G + + +QVRF G Sbjct: 122 FKIDGVDVSSRNIATAERAIYGRNSFRGSHLEFKDRYFEAAEGGLRPIAGVLKQVRFRVG 181 Query: 187 NLLAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPDALVFVGPAEGGILLS 246 NL YD + CRN+LIYF RE+Q + + L+ L+ D L+ VGPAE + Sbjct: 182 NLFGSRASFGQEVYDILLCRNLLIYFSRELQDRALICLKDLLAKDGLLLVGPAETAL--- 238 Query: 247 PRMES---AGIALAFGFRKRSSPLRPSRLPAWITPPQVISAAP 286 PR+ A LAF F K P T P+V +A P Sbjct: 239 PRLHGFIPADWPLAFAFLKSE--------PVKTTAPKVSAAIP 273 >cheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins Eco Escherichia coli K12 Length = 286 Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 132/254 (51%), Gaps = 13/254 (5%) Query: 7 IAELLKAAMGLDMATVGSSLIERVVRERMAALEITDDSLYLAVLQTSE--AQLQALIESA 64 I++L+ G+ +A ++ + R+ +L +TD YL +L++++ + QA I S Sbjct: 30 ISQLIYQRAGIVLADHKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHSGEWQAFINSL 89 Query: 65 VVPETWFFRDREAIFATARLARQRLAEQPAVPVRILSLPCSTGEEPYSLAMALQEE-GVA 123 T FFR+ A AR+R E R+ S STGEEPYS+AM L + G A Sbjct: 90 TTNLTAFFREAHHFPLLADHARRRSGE-----YRVWSAAASTGEEPYSIAMTLADTLGTA 144 Query: 124 PTQFVIDAYDIRTRSLEIAAAGVYGRNSFRGQDLGFRDRHFT----PHEQGWQLQQEIRQ 179 P ++ + A DI T LE A +G+Y + R+F PHE +++QE+ Sbjct: 145 PGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELAN 204 Query: 180 QVRFAPGNLLAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPDALVFVGPA 239 V FAP NLLA + P+D IFCRNV+IYF++ QQ+++ L+KPD L+F G + Sbjct: 205 YVDFAPLNLLAKQYT-VPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFAGHS 263 Query: 240 EGGILLSPRMESAG 253 E L R G Sbjct: 264 ENFSHLERRFTLRG 277 >ZcheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins EcZ Escherichia coli O157:H7 EDL933 Length = 286 Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 131/254 (51%), Gaps = 13/254 (5%) Query: 7 IAELLKAAMGLDMATVGSSLIERVVRERMAALEITDDSLYLAVLQTSE--AQLQALIESA 64 I++L+ G+ +A ++ + R+ +L +TD YL +L++++ + QA I S Sbjct: 30 ISQLIYQRAGIVLADHKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHSGEWQAFINSL 89 Query: 65 VVPETWFFRDREAIFATARLARQRLAEQPAVPVRILSLPCSTGEEPYSLAMALQEE-GVA 123 T FFR+ A AR+R E R+ S STGEEPYS+AM L + G A Sbjct: 90 TTNLTAFFREAHHFPLLADHARRRSGE-----YRVWSAAASTGEEPYSIAMTLADTLGTA 144 Query: 124 PTQFVIDAYDIRTRSLEIAAAGVYGRNSFRGQDLGFRDRHFT----PHEQGWQLQQEIRQ 179 P ++ + A DI T LE A +G+Y + R+F PHE +++QE+ Sbjct: 145 PGRWKVFASDIDTEVLEKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELAN 204 Query: 180 QVRFAPGNLLAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPDALVFVGPA 239 V FA NLLA + P+D IFCRNV+IYF++ QQ+++ L+KPD L+F G + Sbjct: 205 YVDFASLNLLAKQYT-VPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFAGHS 263 Query: 240 EGGILLSPRMESAG 253 E L R G Sbjct: 264 ENFSHLERRFTLRG 277