BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2987.p         (223 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll9513 [NT] COG0835 Chemotaxis signal transduction protein Mlo ...   160   3e-39
PA3705 [NT] COG0835 Chemotaxis signal transduction protein Pae P...   136   4e-32
lin0697_1 [NT] COG0835 Chemotaxis signal transduction protein Li...    45   2e-04
BS_cheV_1 [NT] COG0835 Chemotaxis signal transduction protein Bs...    45   2e-04
BH2969 [NT] COG0835 Chemotaxis signal transduction protein Bha B...    44   2e-04

>mll9513 [NT] COG0835 Chemotaxis signal transduction protein Mlo
           Mesorhizobium loti
          Length = 234

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 133/221 (60%), Gaps = 12/221 (5%)

Query: 12  HLDNCWSRIGIRGEGSCPELAQYVRCLNCPTFARAALQQLDRVDASPEVAQ-QWVQASAH 70
            +D+CW +IG+RG+ SCP L Q++ C NCPT+ + A + LDR  A+P   + +W + +  
Sbjct: 15  EIDDCWRQIGVRGDKSCPLLKQHLHCRNCPTYKKIARRLLDR--AAPSAYRGEWPENAGR 72

Query: 71  AQLQGQGTHALDSALVVRIAGEWLAIATAVVQEVAEARPVHSLPHQRNTAITGVLNIRGV 130
           A +      A+ +A++ R+  EWLA+   +  EVAE+R +HSLPH+RN+A+ G+ N+RG 
Sbjct: 73  AGIDSADDEAMQTAVLFRLGEEWLALPVGIFHEVAESRRIHSLPHRRNSALLGIANVRGE 132

Query: 131 LRICVSLAQLFQLP--------TQSRAPYLLVALHE-GQTLVFPVEEVAGVHRYAPDTLA 181
           L IC+SLA+L  +         T+++    LV + E  + + F V+E+ G+HRY      
Sbjct: 133 LLICLSLAELLGIDERKAGDQGTRTKVFRRLVVVGEPDKRVAFTVDEIHGLHRYQERDTL 192

Query: 182 AVPTTLAQASIQYTRGMVEWRGHPIGLLDHELLFYVLNRSM 222
           AVP T+ +A    T  ++ W+G  +G LD   L  +L+RS+
Sbjct: 193 AVPATIGKALSAATVAVLPWQGRAVGCLDPRQLLTMLDRSI 233


>PA3705 [NT] COG0835 Chemotaxis signal transduction protein Pae Pseudomonas
           aeruginosa
          Length = 229

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 115/219 (52%), Gaps = 9/219 (4%)

Query: 11  QHLDNCWSRIGIRGEGSCPELAQYVRCLNCPTFARAALQQLDRVDASPEVAQQWVQASAH 70
           Q +D+CW+RIG+ G+ SC  LA++V C NC  +A AA   LDR+    +  Q     +  
Sbjct: 12  QQVDDCWNRIGVHGDKSCERLAEHVHCRNCEVYAAAATYLLDRIALRQD--QLDSAETMD 69

Query: 71  AQLQGQGTHALDSALVVRIAGEWLAIATAVVQEVAEARPVHSLPHQRNTAITGVLNIRGV 130
           +Q +        S LV R+  EW  +AT  + EVA   P+HSLPHQR+ A+ GV N+RG 
Sbjct: 70  SQREQSDLGETRSILVFRLGEEWFGLATGSLVEVAPMNPIHSLPHQRSRALQGVTNVRGA 129

Query: 131 LRICVSLAQLFQL-----PTQSR--APYLLVALHEGQTLVFPVEEVAGVHRYAPDTLAAV 183
           L  C+SL +L  L     P   R   P +L+    G  +V PVEEV G+H      +   
Sbjct: 130 LVACLSLGELLDLEPGAAPVSERRVVPRMLIISAAGGPVVAPVEEVDGIHAIPLARILPP 189

Query: 184 PTTLAQASIQYTRGMVEWRGHPIGLLDHELLFYVLNRSM 222
                QAS ++  G+++WR   I LLD   L   + RS+
Sbjct: 190 NHADGQASRRHVAGVLQWRERSITLLDEGPLLQAVARSL 228


>lin0697_1 [NT] COG0835 Chemotaxis signal transduction protein Lin Listeria
           innocua
          Length = 169

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 77  GTHALDSALVVRIAGEWL-AIATAVVQEVAEARPVHSLPHQRNTAITGVLNIRGVLRICV 135
           GT+ L+  +V    GE L  I    V+E+     V  +P   N AI GV  +RG +   V
Sbjct: 12  GTNELE--IVTFTVGENLFCINVLKVKEIIHPLEVTPVPDS-NPAIEGVSQVRGEIMPVV 68

Query: 136 SLAQLFQLP--TQSRAPYLLVALHEGQTLVFPVEEVAGVHRYAPDTLAAVPTTLAQASIQ 193
           +LA++ +LP        +++  L++ + +VF V+EV  + R + + +   P  L+    +
Sbjct: 69  NLARVMKLPEIEPENTKFIITELNQMK-IVFRVDEVHRIQRISWEQIEE-PEKLSIGLEE 126

Query: 194 YTRGMVEWRGHPIGLLDHELLFY 216
              G+V+  G+ + LLD+E + Y
Sbjct: 127 LAVGIVKLDGNLVLLLDYEKIIY 149


>BS_cheV_1 [NT] COG0835 Chemotaxis signal transduction protein Bsu Bacillus
           subtilis
          Length = 162

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 94  LAIATAVVQEVAEARPVHSLPHQRNTAITGVLNIRGVLRICVSLAQLFQL-PTQSRAPYL 152
             I    V+E+ +   V S+PH     + G++ +RG +   +SL   F + P  S+    
Sbjct: 29  FGINVMKVREIIQPVEVTSVPHSHQ-HVEGMIKLRGEILPVISLFSFFGVEPEGSKDEKY 87

Query: 153 LVALHEGQTLVFPVEEVAGVHRYAPDTLAAVPTTLAQASIQYTRGMVEWRGHPIGLLDHE 212
           +V     + +VF V  V+ +HR + + +   PT+L Q   ++  G+++     I L D+E
Sbjct: 88  IVTEFNKRKIVFHVGSVSQIHRVSWEAIEK-PTSLNQGMERHLTGIIKLEDLMIFLPDYE 146

Query: 213 LLFY 216
            + Y
Sbjct: 147 KIIY 150


>BH2969 [NT] COG0835 Chemotaxis signal transduction protein Bha Bacillus
           halodurans
          Length = 155

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 85  LVVRIAGEWLAIATAVVQEVAEARPVHSLPHQRNTAITGVLNIRGVLRICVSLAQLFQLP 144
           +V ++  E  AI    +Q +   +PV  +P   +  I GV+N+RGV+   ++L   F LP
Sbjct: 15  IVFQLGDEEYAIEVDYIQSIERMQPVTRIPGTPSYVI-GVMNLRGVITPVINLRARFGLP 73

Query: 145 TQS--RAPYLLVALHEGQTLVFPVEEVAGVHRYAPDTLAAVPTTLAQASIQYTRGMVEWR 202
            ++   +  +LV   +G  + F V+    V     + +   P  +      Y RG+V+  
Sbjct: 74  AKAHDDSTRILVIADDGVEIGFVVDGANDVVDVPAEKIEPTPEVVGGVQEDYLRGVVKEE 133

Query: 203 GHPIGLLDHE 212
                LL+ E
Sbjct: 134 DRLFTLLNLE 143