BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2982.p (633 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr1966_2 [T] COG2202 FOG Nos Nostoc sp. PCC 7120 140 8e-33 PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa 127 9e-29 all1219_3 [T] COG2199 FOG Nos Nostoc sp. PCC 7120 126 1e-28 PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa 126 2e-28 CC0740_1 [T] COG2199 FOG Ccr Caulobacter vibrioides 123 1e-27 >alr1966_2 [T] COG2202 FOG Nos Nostoc sp. PCC 7120 Length = 263 Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 25/195 (12%) Query: 165 HLDPD-YREAVGAAMSMAMLAIERALVPAHTWVA----PEPPGLV--------------- 204 H+D YRE A + E P H W A P GL Sbjct: 53 HVDSTFYRETRRAIAKQISVKFEEFYPPLHKWFAIHAYPSKDGLSVYFQDISERRYTAAA 112 Query: 205 ----DERMALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLEDAYQRIHPE 260 +ER LA+ G+ GIWD N T E+++S WK +LGYED E+++H+++ +R+HP+ Sbjct: 113 LRESEERWQLALIGNNDGIWDWNIKTDEVFFSSRWKQMLGYEDDEITNHIDEWSKRVHPD 172 Query: 261 DLPYVQETIRQHFTSQSDTYQVEHRIRCRDGGYKWISSRGKVVARDAAGNALRMIGTTTD 320 D+ +V + ++ H ++ Y EHR+ C+DG YKWI RG+ + D AGNALRM+G+ TD Sbjct: 173 DIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQALW-DEAGNALRMVGSHTD 231 Query: 321 ITEVKQLTEKLAKSS 335 ITE KQ E+L K + Sbjct: 232 ITERKQTEEELKKQN 246 Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 391 IHPEDLP-MFQAARQAVLDGGSHWMLEFRVIPPGQGVRWL--RGQARPRRLEDGTTLWHG 447 +HP+D+ + QA + + SH++ E RV+ +W+ RGQA + + G Sbjct: 169 VHPDDIDWVMQAVQDHLAKKTSHYVTEHRVLCKDGSYKWILDRGQALWDEAGNALRM-VG 227 Query: 448 FVSDISQSKAFELELQELALTDHL 471 +DI++ K E EL++ L L Sbjct: 228 SHTDITERKQTEEELKKQNLRSQL 251 >PA2870 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 525 Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 5/192 (2%) Query: 439 EDGTTLWHGFVSDISQSKAFELELQELALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEG 498 E T +W DIS+ KA E EL+ LA TD LT L NR SF+ + + +R Sbjct: 337 EPATLIW---CYDISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAER-FRHP 392 Query: 499 AAVLMCDLDHFKRVNDSLGHAVGDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRAN 558 LM D+DHFK +NDS GH GD+ L A L+ LR+ D +GRLGGEEFA +L + Sbjct: 393 CVALMLDIDHFKNINDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVS 452 Query: 559 RQAAAEFALRLQTSFASHPLLHEGGE-VEVTISIGIALMQADSSGPEQVLRASDDALYRA 617 A + A RL+ + + + GE + +T+SIG+AL + E +L +D ALY+A Sbjct: 453 LDQALDVAERLRAGVEALRVSNPDGEPLRMTVSIGVALRRDAGDDLESLLVRADSALYQA 512 Query: 618 KEKGRNRFEFAP 629 K GRNR E+AP Sbjct: 513 KSGGRNRTEYAP 524 >all1219_3 [T] COG2199 FOG Nos Nostoc sp. PCC 7120 Length = 199 Score = 126 bits (317), Expect = 1e-28, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 8/176 (4%) Query: 459 ELELQE-----LALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEGAAVLMCDLDHFKRVN 513 EL+L+E LA D LT LPNR+ F ++L E + + + +L DLD FK+VN Sbjct: 19 ELKLKEDHLRYLAYHDALTGLPNRKYFAEQLYESINWAKDNNLS-LGLLFIDLDGFKQVN 77 Query: 514 DSLGHAVGDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSR-ANRQAAAEFALRLQTS 572 DSLGH +GD++L A L LR SD V RLGG+EF VIL N Q AA+ A ++ + Sbjct: 78 DSLGHEMGDRLLVVIAQRLSNSLRASDTVARLGGDEFTVILQAIPNVQVAAKVAEKILAN 137 Query: 573 FASHPLLHEGGEVEVTISIGIALMQADSSGPEQVLRASDDALYRAKEKGRNRFEFA 628 + P++ G +V++SIGI++ S P+ +L+ +D A+YRAK G+NRFE A Sbjct: 138 I-TEPIVLNGCTAKVSVSIGISIYPETSLDPDTLLKKADAAMYRAKHLGKNRFELA 192 >PA5487 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 671 Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/179 (40%), Positives = 107/179 (59%), Gaps = 9/179 (5%) Query: 455 SKAFELELQE---LALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEGAAVLMC--DLDHF 509 +KAF L++ ALTD LT LPNR + +RL++E +R R +G +L+ D+DHF Sbjct: 497 AKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHR---DGGDLLLAVLDIDHF 553 Query: 510 KRVNDSLGHAVGDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQAAAEFALRL 569 KR+ND GH GD+VL A L+ +LR++D + R GGEEF V+L + +A + RL Sbjct: 554 KRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERL 613 Query: 570 QTSFASHPLLHEGGEVEVTISIGIALMQADSSGPEQVLRASDDALYRAKEKGRNRFEFA 628 + + A+ P +G + +T S GI + + +G E V +D ALYRAK GR+R E A Sbjct: 614 RAAIAACPFHFKGEPLSITCSAGITAFEGNEAG-EAVFERADQALYRAKRAGRDRLEVA 671 >CC0740_1 [T] COG2199 FOG Ccr Caulobacter vibrioides Length = 566 Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/201 (38%), Positives = 109/201 (54%), Gaps = 1/201 (0%) Query: 428 WLRGQARPRRLEDGTTL-WHGFVSDISQSKAFELELQELALTDHLTQLPNRRSFMQRLQE 486 W A+P DG + + G +DI+Q++ + + LA D LTQLPNR S +Q L + Sbjct: 357 WWALSAKPVHDLDGLFVGFRGVGADITQAREDQERISHLAHYDVLTQLPNRLSLLQNLGK 416 Query: 487 EYSRVQRGVIEGAAVLMCDLDHFKRVNDSLGHAVGDQVLSHFAALLKGQLRKSDAVGRLG 546 + R G AVL DLDHFK VNDSLGH VGD +L A+ L+ + ++ V RLG Sbjct: 417 AWMDHGRDKTSGCAVLCLDLDHFKGVNDSLGHPVGDALLMQVASRLRSCVGETGMVARLG 476 Query: 547 GEEFAVILSRANRQAAAEFALRLQTSFASHPLLHEGGEVEVTISIGIALMQADSSGPEQV 606 G+EFAV+ + + A + S P G V + S+GIA+ D+ P+ + Sbjct: 477 GDEFAVVCAPSPGHEALSALSQSIVETLSAPYDILGHNVLIGASVGIAVAPFDADDPDGL 536 Query: 607 LRASDDALYRAKEKGRNRFEF 627 L+ +D ALYRAK GR + F Sbjct: 537 LKNADLALYRAKGDGRGAYRF 557