BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2978.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc3712 [S] COG3814 Uncharacterized protein conserved in bacteri...    32   0.42 
SMc01450 [S] COG3814 Uncharacterized protein conserved in bacter...    31   0.62 
MA0750 [K] COG0640 Predicted transcriptional regulators Mac Meth...    30   1.7  
CC0922_1 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-aci...    29   2.9  
APE1659 [R] COG0656 Aldo/keto reductases, related to diketogulon...    29   3.0  

>AGc3712 [S] COG3814 Uncharacterized protein conserved in bacteria Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 168

 Score = 31.6 bits (70), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 5  KALMGEILKQLASFGTLYGDVEKIQSALPGQVAPEV-ILHHLRLLYDRGLAAVDMHNFW- 62
          + ++ ++L ++A+ G L GD     + L G  AP V I  HL+  Y   +  V  H FW 
Sbjct: 17 RGVIRKVLGEVAATGRLPGDHHFFITFLTG--APGVRISQHLKSKYAEQMTIVIQHQFWD 74

Query: 63 -RVTDQGYD 70
           +VT+ G++
Sbjct: 75 MKVTETGFE 83


>SMc01450 [S] COG3814 Uncharacterized protein conserved in bacteria Sme
          Sinorhizobium meliloti
          Length = 171

 Score = 31.2 bits (69), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 5  KALMGEILKQLASFGTLYGDVEKIQSALPGQVAPEV-ILHHLRLLYDRGLAAVDMHNFW- 62
          + ++ ++L ++++ G L GD     + L G  AP V I  HL+  Y   +  V  H FW 
Sbjct: 17 RGVIRKVLAEVSATGHLPGDHHFFITFLTG--APGVRISQHLKAKYPEQMTIVVQHQFWD 74

Query: 63 -RVTDQGYD 70
           +VT+ G++
Sbjct: 75 LKVTETGFE 83


>MA0750 [K] COG0640 Predicted transcriptional regulators Mac Methanosarcina
           acetivorans str.C2A
          Length = 283

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 41  ILHHLRLLYDRGLAAVDMHNF--WRVTDQGYDALETGGELFGKYEASP---PPGQR 91
           +L HL+ L D GL  +  H    + +T++G+  L++  EL+   + SP   P G++
Sbjct: 220 LLFHLQKLMDSGLI-MQQHERGDYMITEKGFKILQSLNELYSSLQCSPLQIPAGKK 274


>CC0922_1 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Ccr Caulobacter vibrioides
          Length = 600

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 48  LYDRG-LAAVDMHNFWRVTDQGYDALETGGELFGKYE 83
            +D G +A +D + F ++TD+  D +++GGE     E
Sbjct: 421 FFDTGDVATIDEYGFMQITDRAKDVVKSGGEWISTIE 457


>APE1659 [R] COG0656 Aldo/keto reductases, related to diketogulonate
           reductase Ape Aeropyrum pernix
          Length = 335

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 11  ILKQLASFGTLYGDVEKIQSALPGQV--APEVILHH 44
           I+ ++A F +  GD+ K    + G++  AP+VILHH
Sbjct: 84  IVSKVAGFRSTAGDIVKGARGIAGRLSSAPDVILHH 119