BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2976.p (266 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1627 [R] COG4105 DNA uptake lipoprotein Rso Ralstonia solanac... 336 4e-92 NMB0703 [R] COG4105 DNA uptake lipoprotein Nme Neisseria meningi... 252 6e-67 NMA0907 [R] COG4105 DNA uptake lipoprotein NmA Neisseria meningi... 251 1e-66 PA4545 [R] COG4105 DNA uptake lipoprotein Pae Pseudomonas aerugi... 196 7e-50 yfiO [R] COG4105 DNA uptake lipoprotein Eco Escherichia coli K12 177 2e-44 >RSc1627 [R] COG4105 DNA uptake lipoprotein Rso Ralstonia solanacearum Length = 289 Score = 336 bits (861), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 158/253 (62%), Positives = 196/253 (77%) Query: 14 ALSLTACGLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESRYPFGTYAQQ 73 L+++ACG++PEQ+DET GWSA KLYSEAKD L+ G Y KA+KY+EKLESRYPFG +AQQ Sbjct: 37 CLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGPFAQQ 96 Query: 74 AQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTSIFDTFTDQ 133 AQ++ AYA Y+ E A LAAVDRFI+LHPNHP+VDY YYL+GLINFND F++Q Sbjct: 97 AQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQ 156 Query: 134 DNTERDPKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAMAQYDVHVASYYYRRGA 193 D +ERDPKA R A+D+FK L RFP SKY PDA RM+Y+VNAMA+++V A YYYRRGA Sbjct: 157 DLSERDPKAARAAYDAFKTLITRFPNSKYAPDAAQRMQYIVNAMAEHEVQAARYYYRRGA 216 Query: 194 YVSAANRAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDTERIIQATYPNSPWYHG 253 Y++A NRAQ AIK Y +PA EE L+I+M SYEALG L++DTERII+ YPNS + Sbjct: 217 YLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALGMKDLRDDTERIIKQNYPNSDFLLY 276 Query: 254 GPKKKDNPWWKIW 266 G +KK PW++ W Sbjct: 277 GQRKKAKPWYQWW 289 >NMB0703 [R] COG4105 DNA uptake lipoprotein Nme Neisseria meningitidis MC58 Length = 267 Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 124/269 (46%), Positives = 176/269 (65%), Gaps = 6/269 (2%) Query: 1 MHKILLKFFIIGFALSLTAC---GLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKY 57 M KILL + L+L+AC G + + T WS KLY+EA+DELN+ Y +A+K Sbjct: 1 MKKILL---TVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKL 57 Query: 58 FEKLESRYPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGL 117 +E LESR+P +AQQ+Q+D AYAYY+ +E+ + LAA+DRF +LHP HPN+DY YLRGL Sbjct: 58 YEILESRFPTSRHAQQSQLDTAYAYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGL 117 Query: 118 INFNDRTSIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAM 177 + FN+ S + QD ++RDPKA R+A+ +F L +RFP SKY DA ARM LV+A+ Sbjct: 118 VLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNSKYAADATARMVKLVDAL 177 Query: 178 AQYDVHVASYYYRRGAYVSAANRAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDT 237 ++ VA YY +RGAY++AANRAQ I Y ++ EE+L IL +Y+ L + +L DT Sbjct: 178 GGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPRLAADT 237 Query: 238 ERIIQATYPNSPWYHGGPKKKDNPWWKIW 266 R+++ +P SP+ + D PWW+ W Sbjct: 238 RRVLETNFPKSPFLKQPWRSDDMPWWRYW 266 >NMA0907 [R] COG4105 DNA uptake lipoprotein NmA Neisseria meningitidis Z2491 Length = 267 Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/269 (45%), Positives = 177/269 (65%), Gaps = 6/269 (2%) Query: 1 MHKILLKFFIIGFALSLTAC---GLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKY 57 M KILL + L+L+AC G + + T WS KLY+EA+DELN+ Y +A+K Sbjct: 1 MKKILL---TVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKL 57 Query: 58 FEKLESRYPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGL 117 +E LESR+P +A+Q+Q+D AYAYY+ +E+ + LAA++RF +LHP HPN+DY YLRGL Sbjct: 58 YEILESRFPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGL 117 Query: 118 INFNDRTSIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAM 177 + FN+ S + QD ++RDPKA R+A+ +F L +RFP SKY DA ARM LV+A+ Sbjct: 118 VLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNSKYAADATARMVKLVDAL 177 Query: 178 AQYDVHVASYYYRRGAYVSAANRAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDT 237 ++ VA YY +RGAY++AANRAQ I Y ++ EE+L IL +Y+ LG+ +L DT Sbjct: 178 GGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADT 237 Query: 238 ERIIQATYPNSPWYHGGPKKKDNPWWKIW 266 R+++ +P SP+ + D PWW+ W Sbjct: 238 RRVLETNFPKSPFLTHAWQPDDMPWWRYW 266 >PA4545 [R] COG4105 DNA uptake lipoprotein Pae Pseudomonas aeruginosa Length = 341 Score = 196 bits (497), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 145/235 (61%), Gaps = 2/235 (0%) Query: 20 CGLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESRYPFGTYAQQAQMDIA 79 C E DE + S ++LY +A+D+LN Y+ A+ + LESRYPFG YA+QAQ+++ Sbjct: 18 CSSNKETVDENL--SESQLYQQAQDDLNNKSYNSAVTKLKALESRYPFGRYAEQAQLELI 75 Query: 80 YAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTSIFDTFTDQDNTERD 139 YA Y+ E AA +RFI+LHP HPNVDY YYL+GL +F+ + F D T+RD Sbjct: 76 YANYKNMEPEAARAAAERFIRLHPQHPNVDYAYYLKGLSSFDQDRGLLARFLPLDMTKRD 135 Query: 140 PKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAMAQYDVHVASYYYRRGAYVSAAN 199 P A RD+F+ F L RFP S+Y PDA ARM YL N +A Y+VHV YY +R AYV+AAN Sbjct: 136 PGAARDSFNEFAQLTSRFPNSRYAPDAKARMVYLRNLLAAYEVHVGHYYLKRQAYVAAAN 195 Query: 200 RAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDTERIIQATYPNSPWYHGG 254 R + ++ + ++PA + L I++ +Y LG L + ++ YP++ G Sbjct: 196 RGRYVVENFQETPAVGDGLAIMVEAYRRLGLDDLASTSLETLKLNYPDNASLKDG 250 >yfiO [R] COG4105 DNA uptake lipoprotein Eco Escherichia coli K12 Length = 245 Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 139/243 (57%), Gaps = 1/243 (0%) Query: 6 LKFFIIGFALSLTACGLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESRY 65 +K+ + LSL G K+E ++Y+ A+ +L G + +AI E L++RY Sbjct: 4 MKYLVAAATLSLFLAGC-SGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRY 62 Query: 66 PFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRTS 125 PFG Y+QQ Q+D+ YAYY+ + AA+DRFI+L+P HPN+DY+ Y+RGL N S Sbjct: 63 PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 122 Query: 126 IFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAMAQYDVHVA 185 F D ++RDP+ R AF F L +P S+YT DA R+ +L + +A+Y+ VA Sbjct: 123 ALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 182 Query: 186 SYYYRRGAYVSAANRAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDTERIIQATY 245 YY RGA+V+ NR + ++ YPD+ A +AL ++ ++Y + E +II A Sbjct: 183 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 242 Query: 246 PNS 248 N+ Sbjct: 243 SNT 245