BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2974.p (248 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4543 [S] COG1496 Uncharacterized conserved protein Pae Pseudom... 248 1e-65 STM2661 [S] COG1496 Uncharacterized conserved protein Sty Salmon... 246 5e-65 yfiH [S] COG1496 Uncharacterized conserved protein Eco Escherich... 243 3e-64 ZyfiH [S] COG1496 Uncharacterized conserved protein EcZ Escheric... 243 4e-64 ECs3456 [S] COG1496 Uncharacterized conserved protein Ecs Escher... 243 4e-64 >PA4543 [S] COG1496 Uncharacterized conserved protein Pae Pseudomonas aeruginosa Length = 242 Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 137/247 (55%), Positives = 162/247 (65%), Gaps = 12/247 (4%) Query: 4 LIPDWAAPANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRALLRRLL 63 L PDW APA + A T R+GG S AP+D LNLG HV+DDP V NR L L Sbjct: 5 LTPDWPAPARVRACVTTRSGGVSQAPFDS------LNLGAHVDDDPRAVEENRRRLTERL 58 Query: 64 PAEPAWLTQVHGVNVLDAAALPDDAC-ADACISSTPGAVCVMMTADCLPVLFCDHAGTVV 122 P+WL QVHGV V++A P ADA S+ PG C +MTADCLP LFCD +GT V Sbjct: 59 ECRPSWLDQVHGVTVVEAD--PSRVLRADASWSAMPGVACTIMTADCLPALFCDRSGTRV 116 Query: 123 GAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQQAQA 182 AAHAGWRGLAAGVLE TV ++ G D+++ WLGPAIG FEVG EVR+ F+A A+A Sbjct: 117 AAAHAGWRGLAAGVLEATVDSLGVPG-DELLVWLGPAIGPRAFEVGGEVRDAFVAAHAEA 175 Query: 183 DAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVADT-RFYSYRRDRTTGRM 241 +AF P PG+++ADIYRLAR RL V V GGG CT +DT RFYSYRR TGR Sbjct: 176 RSAFVP-SANPGRFMADIYRLARIRLGAHGVTAVHGGGFCTFSDTARFYSYRRSSRTGRF 234 Query: 242 GSLIWLK 248 SL+WL+ Sbjct: 235 ASLVWLQ 241 >STM2661 [S] COG1496 Uncharacterized conserved protein Sty Salmonella typhimurium LT2 Length = 243 Score = 246 bits (627), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 135/249 (54%), Positives = 160/249 (64%), Gaps = 14/249 (5%) Query: 3 LLIPDWAAPANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRALLRRL 62 L++P W P + A ++ R GG S PYD LNLG H D+P V NR L Sbjct: 4 LIVPQWPLPKGVAACSSTRIGGVSLPPYDS------LNLGAHCGDNPEHVEENRKRLFAA 57 Query: 63 --LPAEPAWLTQVHGVNVLDAAALP-DDACADACISSTPGAVCVMMTADCLPVLFCDHAG 119 LP++P WL QVHG NVL P ADA S+TPG VC +MTADCLPVLFC+ G Sbjct: 58 GNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNREG 117 Query: 120 TVVGAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQQ 179 T V AAHAGWRGL GVLE+TV A + I+AWLGPAIG FEVG EVR+ FLA+ Sbjct: 118 TEVAAAHAGWRGLCEGVLEETVTCF-ADKPENIIAWLGPAIGPTAFEVGPEVRDAFLAKD 176 Query: 180 AQADAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVADTR-FYSYRRDRTT 238 AQAD+AF P+ K+LADIY+LARQRLA V V GG CT +++ F+SYRRD+TT Sbjct: 177 AQADSAFLPH---GEKFLADIYQLARQRLANTGVEHVYGGDRCTFSESETFFSYRRDKTT 233 Query: 239 GRMGSLIWL 247 GRM S IWL Sbjct: 234 GRMASFIWL 242 >yfiH [S] COG1496 Uncharacterized conserved protein Eco Escherichia coli K12 Length = 243 Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/250 (54%), Positives = 160/250 (64%), Gaps = 14/250 (5%) Query: 2 ELLIPDWAAPANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRALLRR 61 +L++P W P + A ++ R GG S PYD LNLG H D+P V NR L Sbjct: 3 KLIVPQWPQPKGVAACSSTRIGGVSLPPYDS------LNLGAHCGDNPDHVEENRKRLFA 56 Query: 62 L--LPAEPAWLTQVHGVNVLDAAALP-DDACADACISSTPGAVCVMMTADCLPVLFCDHA 118 LP++P WL QVHG +VL P ADA S+TPG VC +MTADCLPVLFC+ A Sbjct: 57 AGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNRA 116 Query: 119 GTVVGAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQ 178 GT V AAHAGWRGL AGVLE+TV+ A + I+AWLGPAIG FEVG EVRE F+A Sbjct: 117 GTEVAAAHAGWRGLCAGVLEETVSCF-ADNPENILAWLGPAIGPRAFEVGGEVREAFMAV 175 Query: 179 QAQADAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVADTR-FYSYRRDRT 237 A+A AAF + KYLADIY+LARQRLA V V + GG CT + F+SYRRD+T Sbjct: 176 DAKASAAFIQH---GDKYLADIYQLARQRLANVGVEQIFGGDRCTYTENETFFSYRRDKT 232 Query: 238 TGRMGSLIWL 247 TGRM S IWL Sbjct: 233 TGRMASFIWL 242 >ZyfiH [S] COG1496 Uncharacterized conserved protein EcZ Escherichia coli O157:H7 EDL933 Length = 243 Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/250 (54%), Positives = 161/250 (64%), Gaps = 14/250 (5%) Query: 2 ELLIPDWAAPANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRALLRR 61 +L++P W P + A ++ R GG S PYD LNLG H D+P V NR L Sbjct: 3 KLIVPQWPLPKGVAACSSTRIGGVSLPPYDS------LNLGAHCGDNPDHVEENRKRLFA 56 Query: 62 L--LPAEPAWLTQVHGVNVLDAAALP-DDACADACISSTPGAVCVMMTADCLPVLFCDHA 118 LP++P WL QVHG +VL+ P ADA S+TPG VC +MTADCLPVLFC+ A Sbjct: 57 AGNLPSKPVWLEQVHGKDVLNLTGEPYASKRADASYSNTPGRVCAVMTADCLPVLFCNRA 116 Query: 119 GTVVGAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQ 178 GT V AAHAGWRGL AGVLE+TV+ A + I+AWLGPAIG FEVGAEVRE F+A Sbjct: 117 GTEVAAAHAGWRGLCAGVLEETVSCF-ADNPENILAWLGPAIGPRAFEVGAEVREAFMAV 175 Query: 179 QAQADAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVADTR-FYSYRRDRT 237 A+A AF + KYLADIY+LARQRLA V V + GG CT + F+SYRRD+T Sbjct: 176 DAEASTAFIQH---GDKYLADIYQLARQRLANVGVEQIFGGDRCTYTENETFFSYRRDKT 232 Query: 238 TGRMGSLIWL 247 TGRM S IWL Sbjct: 233 TGRMASFIWL 242 >ECs3456 [S] COG1496 Uncharacterized conserved protein Ecs Escherichia coli O157:H7 Length = 243 Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/250 (54%), Positives = 161/250 (64%), Gaps = 14/250 (5%) Query: 2 ELLIPDWAAPANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRALLRR 61 +L++P W P + A ++ R GG S PYD LNLG H D+P V NR L Sbjct: 3 KLIVPQWPLPKGVAACSSTRIGGVSLPPYDS------LNLGAHCGDNPDHVEENRKRLFA 56 Query: 62 L--LPAEPAWLTQVHGVNVLDAAALP-DDACADACISSTPGAVCVMMTADCLPVLFCDHA 118 LP++P WL QVHG +VL+ P ADA S+TPG VC +MTADCLPVLFC+ A Sbjct: 57 AGNLPSKPVWLEQVHGKDVLNLTGEPYASKRADASYSNTPGRVCAVMTADCLPVLFCNRA 116 Query: 119 GTVVGAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQ 178 GT V AAHAGWRGL AGVLE+TV+ A + I+AWLGPAIG FEVGAEVRE F+A Sbjct: 117 GTEVAAAHAGWRGLCAGVLEETVSCF-ADNPENILAWLGPAIGPRAFEVGAEVREAFMAV 175 Query: 179 QAQADAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVADTR-FYSYRRDRT 237 A+A AF + KYLADIY+LARQRLA V V + GG CT + F+SYRRD+T Sbjct: 176 DAEASTAFIQH---GDKYLADIYQLARQRLANVGVEQIFGGDRCTYTENETFFSYRRDKT 232 Query: 238 TGRMGSLIWL 247 TGRM S IWL Sbjct: 233 TGRMASFIWL 242