BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2966.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1638 Non COG                                                        44   1e-04
STM0050 Non COG                                                        32   0.36 
STM1235 [LR] COG0494 NTP pyrophosphohydrolases including oxidati...    29   2.6  
BMEII0510 [H] COG0190 5,10-methylene-tetrahydrofolate dehydrogen...    29   2.8  
Rv3887c Non COG                                                        28   4.5  

>RSc1638 Non COG
          Length = 245

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 53  VLRGQIDGRDIQLSLAPKKNE-DGLEGRYFFFGGSPEILVAGEVDGDDLIMEESINGKDV 111
           V  G +    I + L  K  E D + G Y    G    LV GE +    +MEES +G  V
Sbjct: 102 VYTGMLGEVPIHMRLGAKPGEIDSVHGEYVAGKGPGVRLVTGEYENGGFLMEESDDGTHV 161

Query: 112 SGQWEGHRQGQSIV-GTWSSA--DGAISKPFALQ 142
           +G WEG       V GTW+ A  DG  + PF L+
Sbjct: 162 TGTWEGAIDAHGAVRGTWTDAAHDGR-TLPFMLR 194


>STM0050 Non COG
          Length = 400

 Score = 32.3 bits (72), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 56  GQIDGRDIQLSLAPKKNEDGLEGRYFFFGGSPE---ILVAGEVDGDDLIMEESINGKDVS 112
           G I G+ + +++    N   L G Y +   +     I++ G +   ++ +EE +  K +S
Sbjct: 37  GTIAGKPVNVNITRFGN--SLNGYYCYEPCNQHKAVIVLRGSLQDKEVHLEERV--KALS 92

Query: 113 GQWEGHRQGQSIVGTWSSADGAISKPFAL 141
           G W        I G W+SAD     P AL
Sbjct: 93  GYWNAEISSSEIKGEWTSADKKRHFPVAL 121


>STM1235 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage
           repair enzymes Sty Salmonella typhimurium LT2
          Length = 153

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 86  SPEILVAGEVDGDD--LIMEESINGKDVSGQWEGHRQGQSIVG 126
            P + VA  V  +D  L++EE+INGK +  Q  GH +    + 
Sbjct: 3   KPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETLA 45


>BMEII0510 [H] COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl
           tetrahydrofolate cyclohydrolase Bme Brucella melitensis
          Length = 319

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 16/71 (22%)

Query: 52  LVLRGQID-GRDIQLSLAPKKNEDGLEGRYFFFGGSPEILVAGEVD--------GDDLIM 102
           L L G ID GR IQ ++AP+K+ DG    +F   G    L  GEV+           +IM
Sbjct: 118 LPLPGHIDSGRVIQ-TIAPEKDVDGF---HFINVGK---LGTGEVETAFVPCTPAGAMIM 170

Query: 103 EESINGKDVSG 113
            E ++G+D+SG
Sbjct: 171 IERVHGRDLSG 181


>Rv3887c Non COG
          Length = 509

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 93  GEVDGDDLIMEESINGKDVSGQWEGHRQGQSIVGTWSSADG 133
           G  DGD L++   + G+    Q+E    G + +G W   DG
Sbjct: 84  GVQDGDTLVLVPRVAGESFEPQYESLSTGLAAMGKWLGRDG 124