BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2962.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PAE1106 [QR] COG0500 SAM-dependent methyltransferases Pya Pyroba...    59   6e-09
SSO0554 [QR] COG0500 SAM-dependent methyltransferases Sso Sulfol...    52   6e-07
alr1520 [QR] COG0500 SAM-dependent methyltransferases Nos Nostoc...    51   1e-06
APE1503 [QR] COG0500 SAM-dependent methyltransferases Ape Aeropy...    46   4e-05
MA1733 [QR] COG0500 SAM-dependent methyltransferases Mac Methano...    45   1e-04

>PAE1106 [QR] COG0500 SAM-dependent methyltransferases Pya Pyrobaculum
           aerophilum
          Length = 162

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 7/101 (6%)

Query: 49  RFMDIGSGLGGAVLDLSRRRPESEFTGIEIAPLPWLVSRLRAALAGNRCRFVRGDYLLLD 108
           R  D+G G G  +L L++R       G+EI PL WL+  LR      RCR + GD   + 
Sbjct: 51  RVYDLGCGYG-VILALAKRMGAVPI-GVEIDPLRWLICSLRC-----RCRVILGDMFQVP 103

Query: 109 FGDYDVVFAYLSPAAMVALWHKARAEMKPGTLLLSYEFHIP 149
             D DVV+ +  P+    L  K  +E++PG  ++SY + +P
Sbjct: 104 LADADVVYIFQWPSVNARLAEKFLSELRPGAYVVSYMWEVP 144


>SSO0554 [QR] COG0500 SAM-dependent methyltransferases Sso Sulfolobus
           solfataricus
          Length = 161

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 12/147 (8%)

Query: 24  QVPFYPSGQRAWDAVAALLPQDRAIRFMDIGSGLGGAVLDLSRRRPESEFTGIEIAPLPW 83
            VP+ P+ ++    +  +    +     D+G G G  ++   +     +  G+EI     
Sbjct: 6   HVPYVPTPEKVVRRMLEIAKASQDDIVYDLGCGDGRIIITAVKDFNVKKAIGVEIND--- 62

Query: 84  LVSRLRAALAG-------NRCRFVRGDYLLLDFGDYDVVFAYLSPAAMVALWHKARAEMK 136
              R+R ALA         R   V+G++  +D  +  VV  +L       L  K   E+K
Sbjct: 63  --ERIREALANIEKNGVTGRASIVKGNFFEVDISEATVVTMFLLTNVNEMLKPKLEKELK 120

Query: 137 PGTLLLSYEFHIPGTTPDVVIDAPGGG 163
           PGT ++S+EF I G  P  V+    G 
Sbjct: 121 PGTRVVSHEFEIRGWNPKEVVKVEDGN 147


>alr1520 [QR] COG0500 SAM-dependent methyltransferases Nos Nostoc sp. PCC
           7120
          Length = 219

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 25  VPFYPSGQRAWDAVAALLPQDRAIRFMDIGSGLGGAVLDLSRRRPESEFTGIEIAPLPWL 84
           VP+ P+ Q   DA+  +    +     D+GSG  G +++ + ++  +   GI+I P    
Sbjct: 64  VPYVPTPQPVVDAMLQVAQVGKNDVLYDLGSG-DGRIVNTAAQKFGTRGIGIDINPERIQ 122

Query: 85  VSRLRAALAG--NRCRFVRGDYLLLDFGDYDVVFAYLSPAAMVALWHKARAEMKPGTLLL 142
            +   A  AG  +R +FV+ D    DF +  VV  YL P   + L      ++KPGT ++
Sbjct: 123 EANENAQKAGVSDRVKFVQQDLFKTDFSEATVVTLYLLPDINLKLRPILLQQLKPGTRIV 182

Query: 143 SYEFHI 148
           S+ F +
Sbjct: 183 SHAFDM 188


>APE1503 [QR] COG0500 SAM-dependent methyltransferases Ape Aeropyrum pernix
          Length = 181

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 2/140 (1%)

Query: 25  VPFYPSGQRAWDAVAALLPQDRAIRFMDIGSGLGGAVLDLSRRRPESEFTGIEIAPLPWL 84
           VP+ P+       +  LL       F D+G G G  V++  ++    +   +E       
Sbjct: 26  VPYVPTRPELIPKILELLDLKEDDVFYDLGCGDGRVVIEAVKKTRVKKAVCVETRDDLVK 85

Query: 85  VSRLRAALAG--NRCRFVRGDYLLLDFGDYDVVFAYLSPAAMVALWHKARAEMKPGTLLL 142
            +R +A   G  +R  F+  D+      D   V+ YL  +   +L  K   E++ GT ++
Sbjct: 86  EARKKAEEEGVSDRIEFINNDFFKTPLKDATAVYMYLLTSVNESLKPKLARELRDGTRIV 145

Query: 143 SYEFHIPGTTPDVVIDAPGG 162
           + +F IPG  P  V  A  G
Sbjct: 146 TLDFPIPGWKPVKVETATTG 165


>MA1733 [QR] COG0500 SAM-dependent methyltransferases Mac Methanosarcina
           acetivorans str.C2A
          Length = 225

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 10/123 (8%)

Query: 37  AVAALLPQDRAIRFMDIGSGLGGAVLDLSRRRPESEFTGIEIAPLPWLVSRLRAALAGNR 96
           +VA++  ++ +I  +DIG+G G     L +R PE+ FT I+I+     +++ R     N 
Sbjct: 35  SVASVYTENPSI--LDIGAGTGLLSAFLMKRYPEASFTLIDISEKMLDMAKDRFGKNSN- 91

Query: 97  CRFVRGDYLLLDFGD-YDVVFA-----YLSPAAMVALWHKARAEMKPGTLLLSYEFHIPG 150
            +++  DY   DF D YD+V +     +L       L+ K+ + +K   + ++ +  + G
Sbjct: 92  IKYIAADYSKYDFADKYDIVISALSIHHLEDEEKEELYKKSYSILKENGIFINAD-QVHG 150

Query: 151 TTP 153
            TP
Sbjct: 151 ETP 153