BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2945.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1992 [S] COG2938 Uncharacterized conserved protein Rso Ralsto...    82   4e-16
NMB0952 [S] COG2938 Uncharacterized conserved protein Nme Neisse...    52   3e-07
NMA1147 [S] COG2938 Uncharacterized conserved protein NmA Neisse...    52   3e-07
XF1074 [S] COG2938 Uncharacterized conserved protein Xfa Xylella...    51   8e-07
YPO0897 [S] COG2938 Uncharacterized conserved protein Ype Yersin...    47   9e-06

>RSc1992 [S] COG2938 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 95

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 5  TTEQRHQDDPAKRARLRWRARRGLLENDLILTRYLDAHEAEMSDDEVDAFSRLMDLTDND 64
          T+   HQ DP +RARLRWRARRGLLEND+I+ R+ + +E E+SDD+V A ++L +L DND
Sbjct: 6  TSTFSHQSDPHRRARLRWRARRGLLENDIIVERFFNRYETELSDDDVGALTQLFELPDND 65

Query: 65 LMDLLLARKEPEAAVDLPQVHALLKTLRTA 94
          LMDLLLARKEPE A+D+P V  +L  LR  
Sbjct: 66 LMDLLLARKEPEGALDVPSVRHVLSLLRAV 95


>NMB0952 [S] COG2938 Uncharacterized conserved protein Nme Neisseria
          meningitidis MC58
          Length = 82

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 12 DDPAKRARLRWRARRGLLENDLILTRYLDAHEAEMSDDEVDAFSRLMDLTDNDLMDLLLA 71
          DD AKR ++R++ RRGLLE DLI  R+++     +SD E+  FS +++  D +L+ L+  
Sbjct: 5  DDIAKR-KIRFQTRRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALING 63

Query: 72 RKEPEAAVDLPQVHAL 87
            E +    +P +  +
Sbjct: 64 HSETDKGHLIPMLEKI 79


>NMA1147 [S] COG2938 Uncharacterized conserved protein NmA Neisseria
          meningitidis Z2491
          Length = 82

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 12 DDPAKRARLRWRARRGLLENDLILTRYLDAHEAEMSDDEVDAFSRLMDLTDNDLMDLLLA 71
          DD AKR ++R++ RRGLLE DLI  R+++     +SD E+  FS +++  D +L+ L+  
Sbjct: 5  DDIAKR-KIRFQTRRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALING 63

Query: 72 RKEPEAAVDLPQVHAL 87
            E +    +P +  +
Sbjct: 64 HSETDKGHLIPMLEKI 79


>XF1074 [S] COG2938 Uncharacterized conserved protein Xfa Xylella
          fastidiosa 9a5c
          Length = 97

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 5  TTEQRHQDDPAKRARLRWRARRGLLENDLILTRYLDAHEAEMSDDEVDAFSRLMDLTDND 64
          T E+   D+PA+  +LRWR+RRG+ E D +  RYL    A+ S+ E   F R +D  D+ 
Sbjct: 10 TAEEPTMDEPAELNKLRWRSRRGMRELDHLFDRYLSHRWAQASEAERGVFLRFLDCEDDK 69

Query: 65 LMDLLLARKEPEAAVDLPQVHALLKTLRT 93
          L   L+  +  + A       AL+ T+R 
Sbjct: 70 LWRWLMGYEVCQDA----SFAALIVTIRA 94


>YPO0897 [S] COG2938 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 88

 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 16 KRARLRWRARRGLLENDLILTRYLDAHEAEMSDDEVDAFSRLMDLTDNDLMDLLLARKEP 75
           +AR+ W  RRG+ E D+ +  + +     +SD+E  AF RL++  D DL + L+   EP
Sbjct: 5  NKARIHWACRRGMRELDISIMPFFEYEYDSLSDNEKQAFIRLLECDDPDLFNWLMNHGEP 64

Query: 76 EAAVDLPQVHALLKTLRTA 94
          + + +L Q+  L+++   A
Sbjct: 65 QDS-ELYQMVKLIQSRNKA 82