BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2910.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 364 e-100 RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 329 5e-90 YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 296 4e-80 STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 276 3e-74 yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 267 2e-71 >PA1859 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 295 Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/293 (61%), Positives = 220/293 (75%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M S+EL++FV+VV++G++S+AAE + T S VSR LSRLE KLG +LL RTTRRMELT Sbjct: 1 MKANSDELQSFVSVVDSGSISAAAEQMGLTASAVSRTLSRLEHKLGTTLLNRTTRRMELT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEG L QAR IL ME E+ + +R + P G+LR++AA PFMLH VVPH+G FR YP Sbjct: 61 EEGRYFLDQARQILQQMEALEERLALRRQSPAGRLRINAASPFMLHAVVPHIGEFRRLYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 DI+LEL TND IDL+EQR D+AIRIG L DSTLHARPL ++RL+I+ASP+YLAR GTP Sbjct: 121 DIQLELNTNDLIIDLLEQRTDVAIRIGALSDSTLHARPLGASRLHILASPEYLARHGTPA 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 S+E L H L+GF+QP+ LN WP+ H GDR + +P I ASSGET+R LAL QGIACL+ Sbjct: 181 SIEGLRGHTLLGFTQPEHLNRWPVVHADGDRLEIQPDISASSGETLRQLALSHQGIACLA 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 SFMTD DI G LV L S +RQ I AVYY N+QL+ RI CFLDF+Q +L Sbjct: 241 SFMTDRDIQDGRLVPLFAEQMSEYRQPIHAVYYRNSQLALRIQCFLDFIQQRL 293 >RSc1152 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 297 Score = 329 bits (843), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 165/293 (56%), Positives = 210/293 (71%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M EEL F VV+ G++++AAE L QT SGVSRAL RLEEKL +LL+RTTRR+ LT Sbjct: 1 MKTTLEELLAFRTVVDTGSVTAAAEQLGQTVSGVSRALRRLEEKLETTLLSRTTRRLALT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 +EG A L AR IL A+++AE+ + +R ++P G+LRV+AA+PFMLH + P V FRA YP Sbjct: 61 DEGTAFLAHARGILAAVDEAEELIALRRQQPAGRLRVNAAMPFMLHVIAPLVADFRAQYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 IELEL T+DR IDL+E+ D+AIRIG L+DSTL AR L + RL ++ASP YL G P Sbjct: 121 QIELELNTSDRIIDLLEEDTDVAIRIGALRDSTLRARRLGTRRLRVLASPAYLKAHGRPR 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 +V+AL H L+GF QP+ LNHWPLR GDR + P ++ASSGET+R LALQG GI CL+ Sbjct: 181 TVDALRHHALLGFVQPESLNHWPLRGPHGDRLRITPTLKASSGETLRQLALQGAGIVCLA 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 FMT D AG LV++L +Q I AVYY NTQL+ RI+CFLD L+ +L Sbjct: 241 DFMTARDRRAGDLVQVLPEATVEIQQPIHAVYYRNTQLASRITCFLDVLEARL 293 >YPO0669 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 303 Score = 296 bits (758), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 166/295 (56%), Positives = 211/295 (71%), Gaps = 2/295 (0%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M + EEL+ F +VV+ G++++AAE QTTSG+SRALSRLE+KL +LL RTTRR+ELT Sbjct: 1 MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLLRRTTRRLELT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEG L AR I+GA++ AE+ + +R KP G+LRV+AA PFM H +VP + FRA YP Sbjct: 61 EEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAAAPFMQHVIVPMITGFRALYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 I LEL T+D IDL+EQR DIAIRIG L+DST+HAR L ++R+ ++ASP+YL R GTP Sbjct: 121 QITLELNTDDLNIDLLEQRTDIAIRIGALRDSTIHARLLGASRVRLLASPNYLQRHGTPH 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 +EAL H L+GF+QP+ LN W L H G R P + ASSGET+R LALQG+GIA LS Sbjct: 181 IIEALADHSLLGFTQPEFLNQWSLPHLPGGRSSIIPNLAASSGETLRLLALQGEGIAELS 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFL--QCKL 293 FMT D AG LV +L Q I+AVYY NTQL+ RI+CFLD++ Q KL Sbjct: 241 DFMTREDQLAGRLVEVLADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIKL 295 >STM0256 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 304 Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 141/289 (48%), Positives = 187/289 (64%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M SEEL FVAVVE+G+ S AAE L Q S VSRA+ +LE KLG SLL RTTR++ LT Sbjct: 1 MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEGE + + IL M AE + P G LR+DAA P MLH ++P + FR YP Sbjct: 61 EEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATPVMLHFLMPLIKPFRERYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 +I L L +++ FI+L+E++ D+AIR G L DS+L ARPL ++ I+ASPDY+AR G PE Sbjct: 121 EITLSLVSSETFINLIERKVDVAIRAGTLTDSSLRARPLFTSYRKIIASPDYIARFGKPE 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 +VE L++H +GFS+P LN WP+ + G ++ + I ++SGET++ L L G GIACLS Sbjct: 181 TVEELKRHLCLGFSEPVSLNTWPIACSDGQLHEIKCGISSNSGETLKQLCLNGNGIACLS 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFL 289 +M D +IA G LV LL SAVYY + +S RI F+DFL Sbjct: 241 DYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289 >yafC [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 304 Score = 267 bits (683), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 132/289 (45%), Positives = 187/289 (64%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M SEEL FV+VVE+G+ S AAE L Q S VSRA+ +LE KLG SLL RTTR++ LT Sbjct: 1 MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 EEGE + ++IL M AE + P G LR+DAA P +LH ++P + FR YP Sbjct: 61 EEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 ++ L L +++ I+L+E++ D+AIR G L DS+L ARPL ++ I+ASPDY++R G PE Sbjct: 121 EVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPE 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 +++ L+QH +GF++P LN WP+ + G ++ + + ++SGET++ L L G GIACLS Sbjct: 181 TIDDLKQHICLGFTEPASLNTWPIARSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLS 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFL 289 +M D +IA G LV L+ SAVYY + +S RI F+DFL Sbjct: 241 DYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFL 289