BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2906.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport... 341 1e-93 TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ... 254 2e-67 alr2539 [E] COG0411 ABC-type branched-chain amino acid transport... 252 5e-67 DR2119 [E] COG0411 ABC-type branched-chain amino acid transport ... 251 7e-67 FN1429 [E] COG0411 ABC-type branched-chain amino acid transport ... 251 9e-67 >RSp0016 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 265 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 178/247 (72%), Positives = 206/247 (83%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 +L+L ISK FGGL VLQ VN V QG IFGLIGPNGAGKTTVFNLITGLL + G++ F Sbjct: 1 MLKLASISKRFGGLSVLQDVNIEVPQGTIFGLIGPNGAGKTTVFNLITGLLEPTGGTLTF 60 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 + PH+IT+ GIARTFQNIR+FKEMTLLENVVVGMH HL+YG LL +L +R Sbjct: 61 GGTSLVGKKPHQITQMGIARTFQNIRIFKEMTLLENVVVGMHRHLDYGAPGLLLSLPGYR 120 Query: 122 RAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 AE++AR+RALELLSWV+LDHKA +AD+LSYG+QRKLE ARALAT+PKLLLLDEPVAGM Sbjct: 121 AAERRARDRALELLSWVKLDHKAGDIADNLSYGDQRKLELARALATEPKLLLLDEPVAGM 180 Query: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 N EK +LM+EI NI+ RG+TIFMIEHDMRFVMGLCERIAVLNFG+IIAEG P+ I+NN Sbjct: 181 NTGEKVDLMAEIENIRARGYTIFMIEHDMRFVMGLCERIAVLNFGRIIAEGPPEAIRNNP 240 Query: 242 EVIEAYL 248 +VIEAYL Sbjct: 241 QVIEAYL 247 >TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 284 Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/270 (50%), Positives = 178/270 (65%), Gaps = 20/270 (7%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL L+ ++ FGGL + +++GE+ GLIGPNGAGKTTVFN+ITG+ + G I F Sbjct: 11 LLLLDHVTMQFGGLVAVDDFTNEIREGELVGLIGPNGAGKTTVFNVITGIYTPTKGRIVF 70 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHL-NYGVASLLFNLGTF 120 ND DI + P++IT GIARTFQNIR+F +MT+LENV+V H L N +L G Sbjct: 71 NDIDITGLRPYQITHLGIARTFQNIRLFSDMTVLENVLVAQHHVLSNPDADRILVKHGKP 130 Query: 121 RRA------------------EQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFA 162 R+ E++ ERA +L+ V L+ + A SL YGEQRKLE A Sbjct: 131 RKGHGRFWFWRAVTKIGYLKKEKEMVERAKDLIKRVGLEKVMYEKASSLPYGEQRKLEIA 190 Query: 163 RALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIA 221 RALAT+PKL+LLDEP AGMNP E +LM I I++ T+ +IEHDM+ VMG+CERI Sbjct: 191 RALATEPKLILLDEPAAGMNPKETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGICERII 250 Query: 222 VLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 251 V+++G+IIAEGTP +I+N+ VIEAYLG+E Sbjct: 251 VMDYGRIIAEGTPKEIQNDPRVIEAYLGRE 280 >alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 259 Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 126/252 (50%), Positives = 173/252 (68%), Gaps = 1/252 (0%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 ++L+ +++ FGGL + V+F V EIFGLIGPNGAGKTT+FNLIT L+ SSG + Sbjct: 8 VILEAKSLTRRFGGLVAVNNVSFTVNHYEIFGLIGPNGAGKTTLFNLITALIPPSSGELI 67 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTF 120 + + I + PH+I GIARTFQNIR+F E++ LENV++ H H + + + L Sbjct: 68 YQNKAIAKLRPHQIASLGIARTFQNIRLFGELSALENVIIARHLHTKSTIFTGVLGLPPA 127 Query: 121 RRAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 + E ++RE+ALELL V L +A A + +YG+QR+LE ARALA +P++LLLDEP AG Sbjct: 128 PKEESRSREKALELLEMVGLSDRAQEKARNFAYGDQRRLEIARALALEPQILLLDEPAAG 187 Query: 181 MNPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKN 239 MNP+EK +L I I+ R TI +IEH + VMGLC+RIAVL+FG++IA G P ++N Sbjct: 188 MNPSEKQQLSDFIREIRDRFNLTIILIEHHVPLVMGLCDRIAVLDFGQLIALGEPSVVRN 247 Query: 240 NQEVIEAYLGKE 251 + VIEAYLG E Sbjct: 248 DPAVIEAYLGNE 259 >DR2119 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 259 Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 127/251 (50%), Positives = 176/251 (70%), Gaps = 3/251 (1%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 +LQ ++++ FGGL + V+F+V++GEIFGLIGPNGAGKTT+FNL+TGL SSG++ Sbjct: 11 ILQARNMTRRFGGLVAVNDVSFDVREGEIFGLIGPNGAGKTTLFNLMTGLTPPSSGTLTS 70 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 + ++PH++ GI+RTFQNIR+F+ ++ LENV V H + G+ +F G R Sbjct: 71 RGQTVTGLSPHRVAGLGISRTFQNIRLFRGLSALENVKVATHRQTHAGLWQGIF--GADR 128 Query: 122 RAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 E+Q RA ELL V L +A LA + SYG+QRKLE ARALAT+P++LLLDEP AGM Sbjct: 129 AEERQVERRAWELLDLVGLSDRAGELAANFSYGDQRKLEIARALATEPRILLLDEPAAGM 188 Query: 182 NPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 N AEK +L + I ++ R T+ +IEH + VMGLC+R+AVLNFG++IA G P ++ + Sbjct: 189 NTAEKGQLTAFIREVRDRFDLTVLLIEHHVPLVMGLCDRVAVLNFGELIAIGDPASVQRD 248 Query: 241 QEVIEAYLGKE 251 +VIEAYLG E Sbjct: 249 PKVIEAYLGGE 259 >FN1429 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 260 Score = 251 bits (642), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 126/252 (50%), Positives = 181/252 (71%), Gaps = 1/252 (0%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 LL DIS +FG L+ + N + GE+ GLIGPNGAGKTTVFN++TG+ ASSG Sbjct: 7 LLVAKDISISFGALKAVNNFNLEINSGELIGLIGPNGAGKTTVFNILTGVYNASSGKYIL 66 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 + +++ + + ++G+ARTFQNIR+FK +++L+NVV + + YG+ S + L ++ Sbjct: 67 DGENVIKTSTSALVKKGLARTFQNIRLFKYLSVLDNVVAAYNFRMKYGILSGMLRLPSYW 126 Query: 122 RAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 + E++A+E+A+ LL LD A+M A +L YGEQRKLE ARA+AT+PK+LLLDEP AGM Sbjct: 127 KEEKEAKEKAMALLKIFDLDKYANMHAGNLPYGEQRKLEIARAMATEPKILLLDEPAAGM 186 Query: 182 NPAEKTELMSEIVNIKQR-GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 NP E +LM+ I I+ + G + +IEHDM+ V+G+CER+ VLN+GKI+A G P+++ NN Sbjct: 187 NPKETEDLMNTIKLIRDKFGIAVLLIEHDMKLVLGICERLVVLNYGKILASGKPNEVINN 246 Query: 241 QEVIEAYLGKEE 252 +VIEAYLGKEE Sbjct: 247 PQVIEAYLGKEE 258