BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2903.p (385 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport... 465 e-131 DR2122 [E] COG0683 ABC-type branched-chain amino acid transport ... 206 7e-53 FN1432 [E] COG0683 ABC-type branched-chain amino acid transport ... 145 1e-34 SP0749 [E] COG0683 ABC-type branched-chain amino acid transport ... 145 1e-34 alr2535 [E] COG0683 ABC-type branched-chain amino acid transport... 142 1e-33 >RSp0013 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 386 Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust. Identities = 245/359 (68%), Positives = 280/359 (77%), Gaps = 1/359 (0%) Query: 27 DIKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINV 86 DIK+GVAEAL+G AA+YG AI+NGF LA++EINA GG+NG K+ALVIEDEQGKKEEAINV Sbjct: 29 DIKIGVAEALSGGAAQYGAAIRNGFQLAADEINAGGGINGSKIALVIEDEQGKKEEAINV 88 Query: 87 FKKLIFQDKVLAVFGPTLSNSAFAADPIANASKVVVFGTSNTADGITAMGPFTFRNSVME 146 FKKLIFQDKV VFGPTLSNSA AADPIA +K VVFGTSNTADGIT++G FRNSV E Sbjct: 89 FKKLIFQDKVALVFGPTLSNSAQAADPIAQGAKTVVFGTSNTADGITSIGDHVFRNSVTE 148 Query: 147 ADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDV 206 ADVLP T++ VK G+KKVAV+YGNDD FTKSGYD FK LE KIPVT TE +AKGDV Sbjct: 149 ADVLPATIQTVVKKAGVKKVAVLYGNDDVFTKSGYDNFKKALEDLKIPVTATETFAKGDV 208 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DFKAQLTKIKA NPDAIV S L E I++Q R LG+ P IGGNG+NS K+F++A+D Sbjct: 209 DFKAQLTKIKATNPDAIVLSALIAEGGPIMVQARQLGLNVPIIGGNGMNSVKVFDLARDK 268 Query: 267 GDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIVADALKTVKLSGN 326 DN +GSPWS EN TP N FI AY A++ + PDQFAAQAYDAM+I A ALKTVK SGN Sbjct: 269 SDNLWVGSPWSIENHTPENSKFITAYTARYKAAPDQFAAQAYDAMHIAAQALKTVKFSGN 328 Query: 327 LAKDRDALRAALPAVKIDGATGKFAFRPAPAVAGKQVGFDADQEAIVNIAKGGKFVLLK 385 L DR A+R ALPAVK GATG FAFR A GK G+DA Q IV++ K GK+ + K Sbjct: 329 LEADRKAIRDALPAVKHTGATGAFAFRQVTA-RGKPAGYDAVQTPIVSVTKAGKYTIEK 386 >DR2122 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 387 Score = 206 bits (524), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/331 (39%), Positives = 184/331 (55%), Gaps = 6/331 (1%) Query: 28 IKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINVF 87 I LGVA A T + +G G LA + INA GGVNG + LV +D G + AIN F Sbjct: 27 ISLGVAVAQTSNVSLFGQEQVAGAKLAEQLINAAGGVNGTPIKLVYQDAGGDENGAINAF 86 Query: 88 KKLIFQDKVLAVFGPTLSNSAFAADPIANASKVVVFGTSNTADGITAMGPFTFRNSVMEA 147 + LI +++VL + GPTLS AFAADPIA +KV V G SNTA G+ +G + R S A Sbjct: 87 QNLINKNRVLGIVGPTLSQQAFAADPIAERAKVPVLGISNTAKGVPQIGTYVARVSAPIA 146 Query: 148 DVLPVTVKAAVK-HFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDV 206 + P VK A+K + IKKVAV+Y +DAF+ S + F++TL+ Q + + T + D Sbjct: 147 VIAPAAVKQALKLNPKIKKVAVMYAQNDAFSVSETETFQSTLKAQGLNIVTVQKSLTTDT 206 Query: 207 DFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAKDA 266 DF Q+T + D +V S LA + NI+ Q R G K +GGNG N+ +F + + Sbjct: 207 DFTTQVTAVINSGADLVVVSALAADGGNIVKQLRQFGYKGLIVGGNGFNTANVFPVCQKD 266 Query: 267 GDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIVADALKTV----K 322 D L+ +S ++ N+ F++ Y+ + DP QFAAQAY + + DALK + K Sbjct: 267 CDGVLVAQAYSPTQKSAVNQKFVSEYRKLYKKDPPQFAAQAYAGIQVFVDALKVIDKKKK 326 Query: 323 LS-GNLAKDRDALRAALPAVKIDGATGKFAF 352 LS +LA R L + A + D G+ F Sbjct: 327 LSTWDLAALRTELNKQVLAGQYDTPLGELRF 357 >FN1432 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Fnu Fusobacterium nucleatum Length = 383 Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 169/365 (46%), Gaps = 28/365 (7%) Query: 6 MLKTIPALLIGAALSQAALAAD------------IKLGVAEALTGPAAKYGVAIKNGFTL 53 M K + L+GA+L A + IK+G LTG A YG++ NG L Sbjct: 1 MKKKLLTTLLGASLLLVACGGEKTEEKSTKEDETIKIGAMGPLTGAVAIYGISATNGLKL 60 Query: 54 ASEEINAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADP 113 A +EINA GG+ G ++ L + DE+G EA+N + KL+ V+ + G S + A Sbjct: 61 AVDEINANGGILGKQVELNLLDEKGDSTEAVNAYNKLVDWGMVVLI-GDVTSKPSVAVAE 119 Query: 114 IANASKVVVFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGND 173 +A + + + T IT G FR + V K A G K VA++ N Sbjct: 120 VAAQDGIPMITPTGTQLNITEAGSNIFRVCFTDPYQGVVLAKFAKDKLGAKTVAIMSNNS 179 Query: 174 DAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAA 233 ++ + F E+Q I V E Y+ GD DFKAQLTKI NPD + E+ Sbjct: 180 SDYSDGVANAFVTEAEKQGIQVVAREGYSDGDKDFKAQLTKIAQQNPDILFIPDYYEQDG 239 Query: 234 NIILQTRALGMKQPFIGGNGLN------SPKLFEIAKDAGDNTLMGSPWSAENQTPANKA 287 I +Q R +G+K +G +G + P + +D + +S ++ + Sbjct: 240 LIAIQAREVGLKSVIVGSDGWDGVVKTVDPSSYAAIEDV----YFANHYSTKDSNEKIQN 295 Query: 288 FIAAYKAKFGSDPDQFAAQAYDAMYIVADALKTVKLSGNLAKDRDALRAALPAVKIDGAT 347 FI YK K+ +P F+A +YD Y++ A++ + D++A+ A+ ++ +G T Sbjct: 296 FIKNYKEKYNDEPSAFSALSYDTAYLLKAAIEKAGTT-----DKEAVTKAIKEIQFEGIT 350 Query: 348 GKFAF 352 G+ F Sbjct: 351 GQLTF 355 >SP0749 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Spn Streptococcus pneumoniae TIGR4 Length = 386 Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/351 (32%), Positives = 170/351 (48%), Gaps = 32/351 (9%) Query: 28 IKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINVF 87 IK+G +G A YG A + G LA +EINA GG++G ++ +V +D + + EA +V Sbjct: 41 IKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVT 100 Query: 88 KKLIFQDKVLAVFGPTLSNSAFAADPIANASKVVVFGTSNTADGITAMGPFTFRNSVMEA 147 L+ Q KV AV GP S + AA A + V + S T DG+T + F + ++ Sbjct: 101 TNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDS 160 Query: 148 DVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDVD 207 + + KKV + N + K + K+ E K + E + GD D Sbjct: 161 FQGKIISNYVSEKLNAKKVVLYTDNASDYAKG---IAKSFRESYKGEIVADETFVAGDTD 217 Query: 208 FKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFEIAK-DA 266 F+A LTK+K + DAIV EA I+ Q R +G+ +P +GG+G N + + A + Sbjct: 218 FQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATAEK 277 Query: 267 GDNTLMGSPWSAENQTPAN-KAFIAAYKAKFGSDPDQFAAQAYDAMYIVADALKTVKLSG 325 N S +S + A KAF+ AY+AK+ +P FAA AYD++++VA+A K K SG Sbjct: 278 ASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAKGAKNSG 337 Query: 326 ----NLAKDRDALRAALPAVKIDGATGKFAFRPAPAVAGKQVGFDADQEAI 372 NLAK +D +G TG Q FDAD + Sbjct: 338 EIKNNLAKTKD----------FEGVTG-------------QTSFDADHNTV 365 >alr2535 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Nos Nostoc sp. PCC 7120 Length = 268 Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/270 (34%), Positives = 142/270 (52%), Gaps = 8/270 (2%) Query: 122 VFGTSNTADGITAMGPFTFRNSVMEADVLPVTVKAAVKHF-GIKKVAVIYGNDDAFTKSG 180 + G SNTA GI +G + R S + V P +VKAA+K IKKVAV + +DAF+KS Sbjct: 1 MIGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALKQNPNIKKVAVFFAQNDAFSKSE 60 Query: 181 YDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTR 240 ++F+ T+++Q + + T + + D DF++Q T PD ++ S LA + N++ Q R Sbjct: 61 TEIFQQTIKEQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLR 120 Query: 241 ALGMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDP 300 LG + IGGNGLN+ +F + K D L+ +S E NKAF AY ++ +P Sbjct: 121 ELGYQGAIIGGNGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEP 180 Query: 301 DQFAAQAYDAMYIVADALKTV----KLSG-NLAKDRDALRAALPAVKIDGATGKFAFRPA 355 QF+AQA+ A+ + ++LK + K+S L + R L L K + G+ +F P Sbjct: 181 PQFSAQAFAAVQVYVESLKALDSMNKVSKIQLPELRTELNKQLLTGKYNTPLGEISFTPI 240 Query: 356 PAVAGKQVGFDADQEAIVNIAKGGKFVLLK 385 V Q F Q + GKF LK Sbjct: 241 GEVV--QQDFYVAQIKMEKDGSQGKFTFLK 268