BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2878.p         (163 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HI0647 [S] COG1285 Uncharacterized membrane protein Hin Haemophi...    91   1e-18
AGpAbx97 [S] COG1285 Uncharacterized membrane protein Atu Agroba...    91   1e-18
slr0014 [S] COG1285 Uncharacterized membrane protein Syn Synecho...    89   6e-18
SMc00799 [S] COG1285 Uncharacterized membrane protein Sme Sinorh...    88   9e-18
YPO2332 [S] COG1285 Uncharacterized membrane protein Ype Yersini...    87   1e-17

>HI0647 [S] COG1285 Uncharacterized membrane protein Hin Haemophilus
           influenzae
          Length = 238

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 102/151 (67%), Gaps = 6/151 (3%)

Query: 3   DYLDIFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTL----AAMNFALDA 58
           D+L IF ++LLAM++G  IG++R L+ KP GVKT  ++ + + ++T+    AA ++A  +
Sbjct: 15  DHLIIFSKMLLAMVLGSVIGLERELKRKPVGVKTCAIIAVTTCVLTIVSIQAAEHYAQVS 74

Query: 59  ADHSRDAISRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWW 118
            +   D +  A Q VI+GIGFLGAGVI+H ++++ + GLTTAA IW +A +GI  GAG+ 
Sbjct: 75  ENIRTDPMRLAAQ-VISGIGFLGAGVILH-KKNDAISGLTTAAIIWASAGIGIAAGAGFV 132

Query: 119 RVALMASGLIVVLFMVGRPLEHFLHRQWLRK 149
             A++A+ +I+V   +   ++ ++HR+  R+
Sbjct: 133 FDAVIATVMILVSIRLSPLVQRWVHRKSQRR 163


>AGpAbx97 [S] COG1285 Uncharacterized membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 194

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 79/126 (62%), Gaps = 5/126 (3%)

Query: 7   IFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTLAAMNFALDAADHSRDAI 66
           I  RL++A ++G  +G +R  +G+  G++T  LV +G+AL  L  +   +   D     +
Sbjct: 53  ITVRLVIAAVLGGVLGFERESKGRSAGLRTHMLVAVGAALFVLGPLQSGMQIGD-----L 107

Query: 67  SRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRVALMASG 126
           SR +QGV+ GIGFLGAG I+      +V GLTTAASIW TAA+G++ G G    A++++ 
Sbjct: 108 SRVLQGVVQGIGFLGAGAIIIRSAQREVEGLTTAASIWATAAIGVMAGLGMEVTAVLSTA 167

Query: 127 LIVVLF 132
           +++V+ 
Sbjct: 168 IVLVIL 173


>slr0014 [S] COG1285 Uncharacterized membrane protein Syn Synechocystis
          Length = 234

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 8/151 (5%)

Query: 3   DYLDIFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTLAAMNFALDAADHS 62
           ++ +   RL +A ++G  +GI+R  R +  G++T  LV +G+AL  + ++    D++   
Sbjct: 2   EWNESLLRLTVAFVLGSTLGIERQWRQRMAGLRTNTLVAIGAALFVIVSVLTNHDSSP-- 59

Query: 63  RDAISRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRVAL 122
               +R    +++GIGFL  GVI+ E  +  V+GL TAA++W +AAVG +CG G +  A+
Sbjct: 60  ----TRIPAQIVSGIGFLAGGVILKEGLT--VKGLNTAATLWCSAAVGTLCGQGLFSEAV 113

Query: 123 MASGLIVVLFMVGRPLEHFLHRQWLRKTEDE 153
           + S +++V  +  RPL  F++ Q +  TE E
Sbjct: 114 LGSMMVLVANIALRPLSTFINHQPMHSTELE 144


>SMc00799 [S] COG1285 Uncharacterized membrane protein Sme Sinorhizobium
           meliloti
          Length = 190

 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 16/170 (9%)

Query: 2   TDYLDIFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSALVTLAAMNF----ALD 57
           T Y  IF RL  A+L+G  IG++R  R +P G++T  LV L SA+  + A+      +L 
Sbjct: 14  TPYPVIFARLFGAVLLGAMIGVEREKRQRPAGLRTHILVSLASAIFAVVAIESVHMKSLS 73

Query: 58  AADHSRDAISRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGW 117
             +   D I R ++ V  G+ FL AG+IV  +   +V+GLTT A +W+  AVG+  G G+
Sbjct: 74  GPEVRIDPI-RVVEAVTAGVAFLAAGMIVFSKG--EVKGLTTGAGMWLAGAVGLSVGFGF 130

Query: 118 WRVALMAS-GLIVVLFMVGRPLEHFLHRQWLRKTEDE---RADISAREED 163
           W +A  A+   +VVLF++GR LE  L  QW  K  DE       S + ED
Sbjct: 131 WLIAAFAAVASLVVLFVLGR-LEVAL--QW--KAPDEFYNTGSTSQKNED 175


>YPO2332 [S] COG1285 Uncharacterized membrane protein Ype Yersinia pestis
          Length = 219

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 87/139 (62%), Gaps = 4/139 (2%)

Query: 6   DIFYRLLLAMLIGCAIGIDRNLRGKPTGVKTLGLVGLGSAL-VTLAAMNFA-LDAADHSR 63
           D+  R+ LA ++G  IG++R LR K  G++T  LVG+GSA+ + ++   F  L   +H  
Sbjct: 4   DLLLRITLAGILGGLIGLERQLRAKEAGLRTHILVGIGSAMFMIVSKYGFEDLLVLEHVS 63

Query: 64  DAISRAIQGVITGIGFLGAGVIVHEQRSEKVRGLTTAASIWVTAAVGIVCGAGWWRVALM 123
              SR    V++G+GFLGAG I+ ++  + V+GLTTAA +WVTAA+G+V G+G + + + 
Sbjct: 64  FDPSRVAAQVVSGMGFLGAGTIMIQK--QMVKGLTTAAGMWVTAAIGLVIGSGLYEIGIY 121

Query: 124 ASGLIVVLFMVGRPLEHFL 142
            + + +V+  V R L   L
Sbjct: 122 GTLMTLVVLEVFRQLSQRL 140