BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2877.p (276 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM1082 [K] COG2207 AraC-type DNA-binding domain-containing prot... 154 1e-37 ybcM [K] COG2207 AraC-type DNA-binding domain-containing protein... 120 4e-27 YPO1837 [K] COG2207 AraC-type DNA-binding domain-containing prot... 84 2e-16 VC1076 [K] COG2207 AraC-type DNA-binding domain-containing prote... 78 2e-14 VC0513 [K] COG2207 AraC-type DNA-binding domain-containing prote... 67 5e-11 >STM1082 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sty Salmonella typhimurium LT2 Length = 259 Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 5/256 (1%) Query: 17 TLTRIRARHEQQLRQVFIGQASICHVRQGKKRVQWGKRHLLCGQDCLLLIAPGTQINVAN 76 T +R+ H +L +V + A+ICH+ QG K + L+ G L++I T + + N Sbjct: 9 TTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVAGPGELIIIPANTPLEIIN 68 Query: 77 LPRAGEYAADMVSLPPTLIDRFRLHYPGQGVPAREAGAISSISSVTQEADLLRAWRHLLE 136 P + +D++ L P +I RF+ Y PA + +S L W ++L+ Sbjct: 69 QPAQNGFRSDLLLLSPEIIARFKTMYVQDYPPANLTSLCTPMSR-----SLTFMWENVLD 123 Query: 137 CLRDEAALPLQCQAAEGLLLALSLAGAMGGLLRERGDAISHHIEQHLLMLPPEQRSLERL 196 +R + LQ A GLLLAL GA G LL ER ++ + Q +++ P + + + + Sbjct: 124 AVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRYTLTEQVRQLIMLSPAKLWTAQEI 183 Query: 197 AAAFHCSVSTLRRRLAREQTGFRELLDKVQLGLALEQLQASSLPIADIAATCGYDSASRF 256 A STLRRRL RE +R+++++V++ AL QLQ+++LPI +IA CGY S SRF Sbjct: 184 ARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCALSQLQSTTLPIGEIALRCGYLSGSRF 243 Query: 257 AMRFRQHYGISPSELR 272 RFRQHYG PS++R Sbjct: 244 TARFRQHYGCLPSQVR 259 >ybcM [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 265 Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 5/256 (1%) Query: 18 LTRIRARHEQQLRQVFIGQASICHVRQGKKRVQWGKRHLLCGQDCLLLIAPGTQINVANL 77 + IR ++ +V ++C +RQGKK + W L + ++L G + + N Sbjct: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 Query: 78 PRAGEYAADMVSLPPTLIDRFRLHYPGQGVPAREAGAISSISSVTQEADLLRAWRHLLEC 137 P AG Y A+M+ LP LI+ F+ Y + + Q +L+ W L Sbjct: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFF-----LPQNPELIYCWEQLKTS 125 Query: 138 LRDEAALPLQCQAAEGLLLALSLAGAMGGLLRERGDAISHHIEQHLLMLPPEQRSLERLA 197 + + +Q A G+LL+L + LL ++ LL P + + ++A Sbjct: 126 VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 Query: 198 AAFHCSVSTLRRRLAREQTGFRELLDKVQLGLALEQLQASSLPIADIAATCGYDSASRFA 257 + SVSTL RRLA E F+ +LD V+L AL +Q + PI++IA GY SRF Sbjct: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 Query: 258 MRFRQHYGISPSELRQ 273 RF + I+P E+R+ Sbjct: 246 ERFHNRFNITPREIRK 261 >YPO1837 [K] COG2207 AraC-type DNA-binding domain-containing proteins Ype Yersinia pestis Length = 291 Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 7/249 (2%) Query: 26 EQQLRQVFIGQASICHVRQGKKRVQWGKRHLLCGQDCLLLIAPGTQINVAN-LPRAGEYA 84 E L V+I + V +G K ++W + + + +I G I++ N L + Sbjct: 22 ELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIINGLSNDDLFF 81 Query: 85 ADMVSLPPTLIDRFRLHYPGQGVPAREAGAISSISSVTQEA-DLLRAWRHLLECLRDEAA 143 + + P+LI F H+P + G I + ++ A + + + ++ + + + Sbjct: 82 SQQLHCDPSLIAAFA-HHPTSA----DLGVIPGVMAIRNLAPEFINTFGNIFNSISENSD 136 Query: 144 LPLQCQAAEGLLLALSLAGAMGGLLRERGDAISHHIEQHLLMLPPEQRSLERLAAAFHCS 203 +P L L L LA + G+ +S + + L P + S +A S Sbjct: 137 IPTVIIKHRMLELLLWLAQRDVKFILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMS 196 Query: 204 VSTLRRRLAREQTGFRELLDKVQLGLALEQLQASSLPIADIAATCGYDSASRFAMRFRQH 263 LRR+LA E R+L+ V++ AL LQ + PI+ IA GY+S+SRFA RFR+ Sbjct: 197 EVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFAERFRKR 256 Query: 264 YGISPSELR 272 +G +P+ +R Sbjct: 257 FGFAPTAIR 265 >VC1076 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 279 Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 15/242 (6%) Query: 26 EQQLRQVFIGQASICHVRQGKKRVQWGKRHLLCGQDCLLLIAPGTQINVANLPRAGEYAA 85 +Q L V I +I V G K++ W L L++ + N+P+ ++ + Sbjct: 16 KQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQYLTFVNVPQQAQFYS 75 Query: 86 DMVSL---PPTLIDRFRLHYPGQGVPAREAGAISSISSVTQEADLLRAWRHLLECLRDEA 142 ++L PP Y P V A+L + L E + Sbjct: 76 RTLTLHEAPPVEWITQSSQYERNEQP-----------RVRVTAELAYCFELLYEMNQQSL 124 Query: 143 ALPLQCQAAEGLLLALSLAGAMGGLLRERGDAISHHIEQHLLMLPPEQRSLERLAAAFHC 202 + Q Q G L A+ L ++ + ++L + P ++ ++E ++A F Sbjct: 125 SEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRERLARYLSVNPGDEHNIETVSAHFAM 184 Query: 203 SVSTLRRRLAREQTGFRELLDKVQLGLALEQLQASSLPIADIAATCGYDSASRFAMRFRQ 262 S +TL R LA E TGFRE+L +V++ AL LQ P+ ++A CGY S +RF+ RF+Q Sbjct: 185 SRATLARHLAAEGTGFREVLSEVRMNYALALLQELR-PLMEVAVACGYQSLTRFSARFKQ 243 Query: 263 HY 264 Y Sbjct: 244 QY 245 >VC0513 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 271 Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 169 RERGDAI---SHHIEQHLLMLPPEQRSLERLAAAFHCSVSTLRRRLAREQTGFRELLDKV 225 RE D + +LL L PE++ ++ F+ S STL RRL + T F+ ++ + Sbjct: 153 RENKDTFLGTDDRVYDYLLSLLPEEQVIKNTCLYFNISRSTLIRRLKKCNTTFKNIVREC 212 Query: 226 QLGLALEQLQASSLPIADIAATCGYDSASRFAMRFRQHYGISPSELRQTL 275 ++ +A E ++ +L I ++ GY S S+F+ F + YG++P EL L Sbjct: 213 RMDVAKEIIETKNLDIDYVSMIVGYQSKSKFSNYFFEKYGVTPMELSGNL 262