BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2849.p (479 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01406 [KE] COG1167 Transcriptional regulators containing a DN... 397 e-110 CC3116 Non COG 267 4e-71 RSc1857 [KE] COG1167 Transcriptional regulators containing a DNA... 267 5e-71 PA2100 [KE] COG1167 Transcriptional regulators containing a DNA-... 227 6e-59 AGl244 [KE] COG1167 Transcriptional regulators containing a DNA-... 220 5e-57 >SMc01406 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Sme Sinorhizobium meliloti Length = 472 Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust. Identities = 230/466 (49%), Positives = 300/466 (64%), Gaps = 12/466 (2%) Query: 23 WVPKLKKGSGPLYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAH 82 WVP L + GPLYLAIA+ IA D+A G+L+ RLPPQR LA L +DFTTV+RAY EA Sbjct: 10 WVPALGRAGGPLYLAIADEIAADIAAGRLEDGVRLPPQRALAAALGIDFTTVSRAYNEAR 69 Query: 83 RRGLVDSVVGRGTFVCGKRRPRI------PRVTEGRPNVDMSMNMPP---EPESSELVAL 133 RRGLV+ VG+GT+V +RR + VDMSMN+PP +P SE + Sbjct: 70 RRGLVEGRVGQGTYVTARRRSAVRPSSGGLAGGLLGSLVDMSMNLPPLFDDPALSEKMWA 129 Query: 134 MQAGWNKVNGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAI 193 A ++ +L LMRYQ GG+ DR AGA WL+ R ++ RL+V GAQ ALLA Sbjct: 130 DVAALDQRGPEL--LMRYQPVGGAERDRAAGAAWLKPRLGDLQADRLVVCTGAQGALLAS 187 Query: 194 LTMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGLPMDNEGIDAVAFAGACAQYAPKALY 253 + ML G +C E +TYPGLR+LA +GI+LV + +D GI AF ACA+Y PKALY Sbjct: 188 VGMLATKGDRICAEALTYPGLRSLAAHMGIELVSVGIDRNGILPDAFEEACARYKPKALY 247 Query: 254 CNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYGFLPRTAPPAIASLGSELTFYV 313 CNPTL NPTT T L RR+A+V IAR + V +IEDDAYG LP P +A+L +L F++ Sbjct: 248 CNPTLHNPTTATLPLERREAIVAIARRHGVVVIEDDAYGALPANPVPPLAALAPDLVFHI 307 Query: 314 TGLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTLATHWIRDGVADLALA 373 GLAK + LRIAYLVAPD S+A RL ++RAT M SP+++ +AT W+ +G A LA Sbjct: 308 AGLAKCLSPALRIAYLVAPDRSAAVRLEGAIRATVGMTSPLSAAIATRWLEEGTAQAVLA 367 Query: 374 NIRKESMARQKIAARILPEHSYASEPEAFHLWIKLRGGWQASSFAAQMRSSGIGVVASDA 433 IR E+ ARQ+IA + L ++ E FHLW+KL W F AQ+R +GIGVVASDA Sbjct: 368 AIRTEAGARQRIAIKGLDGADLLADREGFHLWLKLPSRWSRGEFTAQLRMAGIGVVASDA 427 Query: 434 FAVSAAPEQAVRVCIGGIASRHDIQHALEVIRDALNEAPLARPAVV 479 FA+S PE AVR+ +G +R +++H+L+VI L + P A +V Sbjct: 428 FAISDPPE-AVRLGLGAARTRDELRHSLDVIAGLLAQFPAAHNLIV 472 >CC3116 Non COG Length = 448 Score = 267 bits (683), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 175/450 (38%), Positives = 251/450 (55%), Gaps = 17/450 (3%) Query: 17 PKNSTLWVPKLKKGSGPLYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVAR 76 P + W+ +++ GP Y IA A+ VA G+LQ ++P QR++A L+ +DFTTV R Sbjct: 8 PNPAAAWLRRVEAFDGPAYRRIALALEAAVAEGELQAGDQIPAQREVARLIGVDFTTVTR 67 Query: 77 AYTEAHRRGLVDSVVGRGTFVCGKRRPRIPRVTEGRPNVDMSMNMPPEPESSELVALMQA 136 AY A RGL++ GRGTF+ R RI G +D+SMN+PP P+ L L+Q Sbjct: 68 AYGLARERGLIEGTAGRGTFI----RLRINEDEAGL--IDLSMNLPPPPQGLNLAGLLQD 121 Query: 137 GWNKVNGKLR--DLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAIL 194 + + LM Y GS R AGA WL V+P R++VT GAQ AL A+L Sbjct: 122 ATRAILARTEPATLMAYHPGAGSLAQRSAGAAWLAPTLGPVDPGRVVVTGGAQTALSALL 181 Query: 195 TMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGLPMDNEGIDAVAFAGACAQYAPKALYC 254 L PG + E TYPGL A A + G+ LV P+D+EG+ A A AQ+ P+ + C Sbjct: 182 DYLAAPGDTIIVEAFTYPGLLATARRRGLTLVACPLDDEGLQPEALAQLVAQHGPRLICC 241 Query: 255 NPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYGFLPRTAPPAIASLGSELTFYVT 314 PT NPT T S +RR A++EIAR V I+EDDAYG LP + PA+A+L E ++V Sbjct: 242 TPTFQNPTAATMSPARRAAVIEIARAAGVTILEDDAYGLLPASPAPALAALWPEGVYHVA 301 Query: 315 GLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTLATHWIRDGVADLALAN 374 AK++ GLR+AY+VAP A +L A M +P+ + + T WIRDGVA LA Sbjct: 302 TTAKALSPGLRLAYVVAPP-GCAEGFAQALHAIAQMPAPLMAGIVTQWIRDGVAAKVLAG 360 Query: 375 IRKESMARQKIAARILPEHSYASEPEAFHLWIKLRGGWQASSFAAQMRSSGIGVVASDAF 434 +R E++AR+ +AA +LP + E+ H+W+ G +A A R G+ +V ++AF Sbjct: 361 VRSEAVARRALAATLLPRA--VGDAESLHVWLA---GAEAPPAA---RERGLALVGANAF 412 Query: 435 AVSAAPEQAVRVCIGGIASRHDIQHALEVI 464 + +R+ +G A R + L+ + Sbjct: 413 RAPGVTGEGLRISLGATAKRAALTQGLKAL 442 >RSc1857 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 463 Score = 267 bits (682), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 175/452 (38%), Positives = 242/452 (53%), Gaps = 11/452 (2%) Query: 23 WVPKLKKGSGPLYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAH 82 W ++ + G YL I I + + G+L R+PPQR LA+ L +D TTV RAYTEA Sbjct: 13 WDLRITRTGGARYLQIVEFIEQAIGDGRLAAGDRVPPQRSLAKALGVDLTTVTRAYTEAK 72 Query: 83 RRGLVDSVVGRGTFVCGKRRPRIPRVTEGRPNVDMSMNMPPEPESSELVALMQAGWNKV- 141 RR L+D+ GTF+ R + RV VDMSMN+PP P + L++ G ++V Sbjct: 73 RRHLIDARGALGTFIAAPRA-ELARV------VDMSMNVPPPPAGLDFQDLLRRGLSQVL 125 Query: 142 -NGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAILTMLVGP 200 + LM YQ GGS DR AGA WL + V+ RL+V PGAQ AL A++ P Sbjct: 126 LHSDPHLLMTYQLGGGSPADRAAGANWLAQIVGAVDASRLVVCPGAQAALAAVILSHTRP 185 Query: 201 GGVLCCEDVTYPGLRALAGQLGIKLVGLPMDNEGIDAVAFAGACAQYAPKALYCNPTLLN 260 G + E +TYPG+RA A QLG +++ + D +G+ A ACAQ A + Y NPT N Sbjct: 186 GDAIVTEPLTYPGIRAAAVQLGRRVLTVACDADGMRPDALEAACAQGA-RLAYLNPTAQN 244 Query: 261 PTTCTTSLSRRQALVEIARHYEVAIIEDDAYGFLPRTAPPAIASLGSELTFYVTGLAKSV 320 PTT T +RR + A V I+EDD Y L APP +A T+YV+ L+K++ Sbjct: 245 PTTHTMPAARRADIARTAERCGVTILEDDPYWLLTPDAPPPLAHFAPAQTYYVSTLSKTL 304 Query: 321 GAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTLATHWIRDGVADLALANIRKESM 380 GLR AYL+ P + L A+LRA +MA+P+T+ L+T WI+DG A L IR E+ Sbjct: 305 SPGLRTAYLLLPAGTRGDDLLAALRAFALMAAPVTAALSTQWIQDGSAPQLLDGIRTEAF 364 Query: 381 ARQKIAARILPEHSYASEPEAFHLWIKLRGGWQASSFAAQMRSSGIGVVASDAFAVSAAP 440 AR+++A R L A P H+W +L W + + V SDAF P Sbjct: 365 ARRELADRWLSGIGQAP-PTGIHVWHRLPDHWSTHQLTRAALAEDLRVTPSDAFCDGPNP 423 Query: 441 EQAVRVCIGGIASRHDIQHALEVIRDALNEAP 472 A+R+ +GG+ R + AL + L P Sbjct: 424 PNAIRISLGGVDDRAQLSLALRKLAVLLERKP 455 >PA2100 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 477 Score = 227 bits (578), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 148/429 (34%), Positives = 217/429 (50%), Gaps = 8/429 (1%) Query: 27 LKKGSGPLYLAIANAIAEDVATGQLQPEQRLPPQRKLAELLALDFTTVARAYTEAHRRGL 86 L +G G Y +A I E + G L+ +LPP R LA+ L + TV+RAY E R GL Sbjct: 17 LPEGPGLKYKRLAQGIEESIRNGVLRQGVKLPPHRILADKLGVTAGTVSRAYGELERMGL 76 Query: 87 VDSVVGRGTFVCGKRRPRIPR------VTEGRPNVDMSMNMPPEPESSELVALMQAGWNK 140 V++ VG GTFV + R R V DMS NM +EL++ + Sbjct: 77 VEARVGDGTFVRNRGRERAREAGFRNFVDSTEMCNDMSRNMHIPGNETELLSRSLQQLSA 136 Query: 141 VNGKLRDLMRYQDFGGSAEDREAGALWLRRRGLVVEPQRLLVTPGAQCALLAILTMLVGP 200 L++LM Y G R+AGA WL E Q++L G+Q LL +L ++ Sbjct: 137 APELLQELMLYTPDTGLLRHRQAGATWLSHGEFQAEHQQILCVNGSQHGLLVVLMAMLRA 196 Query: 201 GGVLCCEDVTYPGLRALAGQLGIKLVGLPMDNEGIDAVAFAGACAQYAPKALYCNPTLLN 260 G L E ++YPGL + A LGIK++GL MD EG+ A AC ALYC PT+ N Sbjct: 197 GDTLVTEQLSYPGLISAAQLLGIKVLGLEMDEEGLLPDALEEACRTNRITALYCTPTIQN 256 Query: 261 PTTCTTSLSRRQALVEIARHYEVAIIEDDAYGFLPRTAPPAIASLGSELTFYVTGLAKSV 320 PTT S +RR+ + +I R + + +IED+ + L P + L E + G++K+V Sbjct: 257 PTTAVMSGARRKEIAKICREHGLIVIEDETHAVLMAERPTPLCHLLPERGILIGGMSKAV 316 Query: 321 GAGLRIAYLVAPDASSAARLTASLRATTVMASPITSTLATHWIRDGVADLALANIRKESM 380 AGLR+ Y+ AP AS +R+ A+LR + MA+P+ +A+ W+ DG A L R E Sbjct: 317 AAGLRVGYVHAP-ASMVSRMAAALRNSCWMATPLVLEIASRWVEDGTASALLEYQRGEIA 375 Query: 381 ARQKIAARILPEHSYASEPEAFHLWIKLRGGWQASSFAAQMRSSGIGVVASDAFAVSAAP 440 RQ + +L +Y S H W+++ W+A MR V ++AF+ Sbjct: 376 RRQALVVDLLQGLTYRSHLCCPHFWVEVPAPWRAIEIEQGMRGQQHLVTTAEAFSTGRGT 435 Query: 441 -EQAVRVCI 448 QA+R+ + Sbjct: 436 LPQAIRISV 444 >AGl244 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 482 Score = 220 bits (561), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 153/477 (32%), Positives = 222/477 (46%), Gaps = 25/477 (5%) Query: 10 PSEESTMPKNSTLWVPKLKKGSGPL-YLAIANAIAEDVATGQLQPEQRLPPQRKLAELLA 68 PS + W P L K G + A+ I D+ G L+P R+P R LA L Sbjct: 8 PSPDPVSTTRPVAWRPTLAKQKGETKHSALTERIIADIDAGVLKPMDRMPTHRDLARELG 67 Query: 69 LDFTTVARAYTEAHRRGLVDSVVGRGTFVCGKRRPRIPRVTE--GRPNVDMSMNMPPEPE 126 L TV+ +Y EA R G + +GRGTFV RVTE GR +D S P E Sbjct: 68 LSVQTVSLSYKEAERLGYLSGEIGRGTFVK-------TRVTERAGRMMLDHS---PTEVL 117 Query: 127 SSELV--ALMQAGWNKVNGKLRDLMRYQDFG---------GSAEDREAGALWLRRRGLVV 175 ++ + N LR++ + G G RE WL G+ Sbjct: 118 DLSIIRGVYLDDHENASRTILREMADSDNSGFMRPCRPVAGLDSHRETARTWLGMMGVTA 177 Query: 176 EPQRLLVTPGAQCALLAILTMLVGPGGVLCCEDVTYPGLRALAGQLGIKLVGLPMDNEGI 235 +R+LVT GA + L+ ++ V+ CE++T G+ L+ LG L GLP D EGI Sbjct: 178 GAERILVTNGAAHGIFLALSCIIRSNDVVLCENLTDHGIIGLSNILGFSLKGLPTDEEGI 237 Query: 236 DAVAFAGACAQYAPKALYCNPTLLNPTTCTTSLSRRQALVEIARHYEVAIIEDDAYGFLP 295 A ACA +AL PTL NPT + +RRQA+ IA Y + IIED+ Y + Sbjct: 238 LPDALEAACAAGGVRALVLIPTLNNPTGHVSGAARRQAIATIAERYGIFIIEDEVYRPMI 297 Query: 296 RTAPPAIASLGSELTFYVTGLAKSVGAGLRIAYLVAPDASSAARLTASLRATTVMASPIT 355 P+I + +L F+VT K+V GLR+ YLV P A S R + LR ++ + +T Sbjct: 298 EDDLPSITEMLPDLGFFVTSFTKTVLTGLRVGYLVVPPAYS-IRAASILRVSSWSGTYLT 356 Query: 356 STLATHWIRDGVADLALANIRKESMARQKIAARILPEHSYASEPEAFHLWIKLRGGWQAS 415 + +AT W+ +G A L R E+ ARQKIA IL +H ++ P +F W+ + W Sbjct: 357 AEIATRWVENGTARRLLDVQRTEARARQKIAVDILGDHIGSTHPLSFCAWLTVPPRWTED 416 Query: 416 SFAAQMRSSGIGVVASDAFAVSAAPEQAVRVCIGGIASRHDIQHALEVIRDALNEAP 472 + + + V S+ F +R+C+GG + + AL +R + P Sbjct: 417 GLVRALTNQNVAVTPSEPFIAGPGHGGGIRICLGGRLNHASLARALTTVRQTFEQLP 473