BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2839.p (345 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0814 [K] COG2207 AraC-type DNA-binding domain-containing pr... 357 3e-98 SMa1454 [K] COG2207 AraC-type DNA-binding domain-containing prot... 350 3e-96 RSp0653 [K] COG2207 AraC-type DNA-binding domain-containing prot... 245 1e-64 PA2556 [K] COG2207 AraC-type DNA-binding domain-containing prote... 235 1e-61 PA1182 [K] COG2207 AraC-type DNA-binding domain-containing prote... 190 5e-48 >BMEII0814 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 327 Score = 357 bits (915), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 175/322 (54%), Positives = 232/322 (72%), Gaps = 2/322 (0%) Query: 10 SIPFAFVEDALGCLLRQGYETAPVLQQAGLVSNEDELGPVTAEQYGALWLAIARITDDEF 69 +I FVEDAL + ++G +TAP++ AGL E PVT QYG LW IA+ DDEF Sbjct: 5 NITPGFVEDALESVRQRGLDTAPLMAAAGLPQKVRE--PVTNVQYGRLWWLIAQTIDDEF 62 Query: 70 FGLSARPMRQGSFTLLCHAVLHSQSLGQALRRALRFLRIVLDEPYGELHVEDGKAHIILI 129 FGL+ARPMR GSF LLCHAVLH+ +L ALRRAL+FL +VLD+P GEL + DG AHI+L Sbjct: 63 FGLAARPMRPGSFDLLCHAVLHAGTLEHALRRALQFLNVVLDDPRGELRIRDGMAHIVLT 122 Query: 130 KNRSPYPAFAYRTFLLLLLGLACWLVGRRIPLQRIDFSCALPEGRPDYLEFFGVPVNFNK 189 PAFAYR + L+L+G+A WLVGRRIPL+ +DF+C P R DY +FFG PV F++ Sbjct: 123 DAAGHRPAFAYRAYWLILMGVASWLVGRRIPLRTLDFACPAPVHRQDYHKFFGAPVLFDQ 182 Query: 190 PRCCLSFDAVYLDLPVIRSDIALKPFLRDVPANLLVRYRHDTGWVTRLRDSLKQSSPTDW 249 P L F + YL LP+IRSD+AL+ FLR+ PAN+L+RYRHD +R+R L +W Sbjct: 183 PATRLVFSSTYLALPIIRSDVALENFLREAPANILIRYRHDHDISSRVRAQLNALPAQEW 242 Query: 250 PDFDVIAERFEVSPATLRRRLRDEGQSYASLKDEIRSGLAQALLGKNELSVAQISTQLGF 309 P FD +A+ +S TLRRRL+ EGQS+ ++KDE+R +AQ LL + +LS+A+++ +LG+ Sbjct: 243 PSFDDLAKGLRMSAPTLRRRLKAEGQSFGTIKDELRFVIAQKLLQEKKLSIAEVAAELGY 302 Query: 310 TEPSAFHRAFRKWTGKSPGAFR 331 +EPSAF+RAF+KW G+SPG FR Sbjct: 303 SEPSAFYRAFQKWVGRSPGQFR 324 >SMa1454 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 356 Score = 350 bits (898), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 176/319 (55%), Positives = 224/319 (70%), Gaps = 2/319 (0%) Query: 15 FVEDALGCLLRQGYETAPVLQQAGLVSNEDELGPVTAEQYGALWLAIARITDDEFFGLSA 74 F++D L CL R G + P+L QAGL S GPV+A QYGA W A+A+ DDEFFG A Sbjct: 19 FMDDTLECLRRHGVDAGPLLAQAGLPSIVT--GPVSANQYGAFWHAVAQAMDDEFFGEGA 76 Query: 75 RPMRQGSFTLLCHAVLHSQSLGQALRRALRFLRIVLDEPYGELHVEDGKAHIILIKNRSP 134 RPMR GSF LLCHA+L + +L ALRRALRFLR+VL+ P+GEL VE+G A I+L + Sbjct: 77 RPMRAGSFALLCHAILSTATLEHALRRALRFLRVVLENPHGELVVENGLAQIVLKDAGAT 136 Query: 135 YPAFAYRTFLLLLLGLACWLVGRRIPLQRIDFSCALPEGRPDYLEFFGVPVNFNKPRCCL 194 AFAYRTF ++L G+ CWL+GRR+P++ +DF C+ P DY FFG PV+F++ R L Sbjct: 137 RSAFAYRTFWIILHGVNCWLIGRRLPIRWVDFRCSAPPAGTDYRLFFGAPVHFDQRRTRL 196 Query: 195 SFDAVYLDLPVIRSDIALKPFLRDVPANLLVRYRHDTGWVTRLRDSLKQSSPTDWPDFDV 254 FDA YL LP IR + ALK FLR PAN+LVRYRHD G +R L ++P+ WP F+ Sbjct: 197 VFDAEYLKLPPIRDERALKHFLRHAPANILVRYRHDAGLSAAIRQRLHATAPSAWPGFEA 256 Query: 255 IAERFEVSPATLRRRLRDEGQSYASLKDEIRSGLAQALLGKNELSVAQISTQLGFTEPSA 314 IA R ++ TLRRRLR EGQ+Y S+K+++R LA L +VAQ++ +LGF+EPSA Sbjct: 257 IAARMRIAAPTLRRRLRQEGQTYRSIKEDLRRALAMEALADGRTNVAQLAVELGFSEPSA 316 Query: 315 FHRAFRKWTGKSPGAFRRD 333 FHRAFRKWTGKSP FRR+ Sbjct: 317 FHRAFRKWTGKSPAQFRRN 335 >RSp0653 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 387 Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 129/332 (38%), Positives = 191/332 (57%), Gaps = 4/332 (1%) Query: 4 KASDTPSIPFAFVEDALGCLLRQGYETAPVLQQAGLVSN--EDELGPVTAEQYGALWLAI 61 K + +I + V + L +G + P++ AG+ G V++ QYGALW AI Sbjct: 51 KHHEKGTISMSLVAETLALARSRGLDVQPLVAAAGIAPQMLASPRGRVSSAQYGALWSAI 110 Query: 62 ARITDDEFFGLSARPMRQGSFTLLCHAVLHSQSLGQALRRALRFLRIVLDEPYGELHVED 121 AR DDEFFG + PMR GSF + A L +++ QAL+RA F+R+VLD+ ++ + Sbjct: 111 ARALDDEFFGQDSHPMRSGSFVAMTQAALTARTGRQALQRATGFMRLVLDDLAVQVDADA 170 Query: 122 GKAHIILI-KNRSPYPA-FAYRTFLLLLLGLACWLVGRRIPLQRIDFSCALPEGRPDYLE 179 + + + +P PA FAY T+ +++ GL CWLVGRRIPL F C P +Y Sbjct: 171 QRVRLTFAHRPGTPEPAMFAYATWFIMVYGLVCWLVGRRIPLIAARFRCPAPPAGQEYRL 230 Query: 180 FFGVPVNFNKPRCCLSFDAVYLDLPVIRSDIALKPFLRDVPANLLVRYRHDTGWVTRLRD 239 F + F +P C+ +LDLPVI++ ++K FLRD P + +V+YR+ + R+R Sbjct: 231 MFCDDLAFGQPVSCVDLSPAFLDLPVIQTAASIKAFLRDAPGSFVVKYRNPDAFAARVRK 290 Query: 240 SLKQSSPTDWPDFDVIAERFEVSPATLRRRLRDEGQSYASLKDEIRSGLAQALLGKNELS 299 +L+ WP +A R V+ AT+RRRL+ EG +Y S+KD++R +A L + Sbjct: 291 TLRTLPAAAWPASGAMALRLNVAEATMRRRLKLEGHTYQSIKDDLRRDIAINALQDARRT 350 Query: 300 VAQISTQLGFTEPSAFHRAFRKWTGKSPGAFR 331 +A I+ +GF EPSAFHRAFRKWTG P +R Sbjct: 351 IADIAAMVGFAEPSAFHRAFRKWTGMRPTDYR 382 >PA2556 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 361 Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 139/333 (41%), Positives = 189/333 (56%), Gaps = 7/333 (2%) Query: 4 KASDTPSIPFAFVEDALGCLLRQGYETAPVLQQAGLVSNEDELGP----VTAEQYGALWL 59 +AS +I V +AL RQG E VLQ AG+ + LG VT+ Y LWL Sbjct: 8 QASTKGTISVRLVGEALVEWRRQGGEQGEVLQAAGI--DPQLLGKPYARVTSHAYSRLWL 65 Query: 60 AIARITDDEFFGLSARPMRQGSFTLLCHAVLHSQSLGQALRRALRFLRIVLDEPYGELHV 119 +AR DDEFFG+ +R ++ GSF + +H Q+L AL LRFL + D+ L Sbjct: 66 DLARRMDDEFFGMDSRRLKSGSFAFMSRCAIHEQTLEPALTGILRFLCLQFDDFQPRLQR 125 Query: 120 EDGKAHIILIKNRSPYP-AFAYRTFLLLLLGLACWLVGRRIPLQRIDFSCALPEGRPDYL 178 G A I+L + Y A +Y T ++ GLACWLVGRRIP+ ID C P+ DY Sbjct: 126 RGGLAEIVLDEAPGRYGRALSYFTLWMITHGLACWLVGRRIPILAIDLRCPQPDYIEDYR 185 Query: 179 EFFGVPVNFNKPRCCLSFDAVYLDLPVIRSDIALKPFLRDVPANLLVRYRHDTGWVTRLR 238 F + F++P L F+A L LPV R L+ FL PAN+LVRYR R++ Sbjct: 186 VMFSDNLRFSRPLSRLLFNADCLALPVRRDKRELRRFLLGAPANILVRYRDPQSLAARIK 245 Query: 239 DSLKQSSPTDWPDFDVIAERFEVSPATLRRRLRDEGQSYASLKDEIRSGLAQALLGKNEL 298 L+ P WPD D +A F ++P+TLRR+L EGQSY +LKD++R LA A L Sbjct: 246 AYLRSLRPGRWPDADALAGHFFMAPSTLRRKLSLEGQSYQALKDQVRRDLAIARLDAGAA 305 Query: 299 SVAQISTQLGFTEPSAFHRAFRKWTGKSPGAFR 331 + A+++ +LGF + SAFH+AF+KWTG +PG +R Sbjct: 306 NFAELALELGFADGSAFHKAFKKWTGSTPGQYR 338 >PA1182 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 333 Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 114/325 (35%), Positives = 177/325 (54%), Gaps = 4/325 (1%) Query: 10 SIPFAFVEDALGCLLRQGYETAPVLQQAGLVSN--EDELGPVTAEQYGALWLAIARITDD 67 +I FV AL RQG + +L++AG+ ++ + EQ+ L + + DD Sbjct: 5 TIASHFVRAALRGATRQGLDGPALLRRAGIQPALLDEPRARIAPEQFTRLMQLLWEVLDD 64 Query: 68 EFFGLSARPMRQGSFTLLCHAVLHSQSLGQALRRALRFLRIVLDEPYGELHVEDGKAHII 127 E+ G ++G+F ++CH ++H ++L +AL+R F + P L + + Sbjct: 65 EYMGFGEVRSKRGTFAMMCHTLIHCRTLEKALQRGELFYGLFPQAPLIHLRRDGDLVRLS 124 Query: 128 LIKNRSPYP-AFAYRTFLLLLLGLACWLVGRRIPLQRIDFSCALPEGRPDYLEFFGVPVN 186 L + P F + L++ LA WL+G+RI L+ FS P+ + +Y F P Sbjct: 125 LEERHLSDPDHFLAESLLVIWHRLASWLIGQRIRLEEATFSYPAPDHQAEYDLLFPCPRR 184 Query: 187 FNKPRCCLSFDAVYLDLPVIRSDIALKPFLRDVPANLLVRYRHDTGWVTRLRDSLKQSSP 246 F+ L F A YL +P+++ + LK FL+ PA+LL R +++R L + Sbjct: 185 FSAGCTSLLFAARYLGMPLLQDERTLKQFLQHSPADLLARPDGGDSLTSQIRRLLGRDC- 243 Query: 247 TDWPDFDVIAERFEVSPATLRRRLRDEGQSYASLKDEIRSGLAQALLGKNELSVAQISTQ 306 WPD D +A + +S TLRR LR+EG S+ LKD +R LA LG++ELS+ I+ Q Sbjct: 244 RRWPDLDQVARQLHMSSQTLRRHLREEGGSFQQLKDHLRRDLAIYHLGRDELSIQDIAEQ 303 Query: 307 LGFTEPSAFHRAFRKWTGKSPGAFR 331 LGF+EPSAFHRAF+KWTG +PGA+R Sbjct: 304 LGFSEPSAFHRAFKKWTGLTPGAYR 328