BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2826.p         (295 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MJECL35 [L] COG3593 Predicted ATP-dependent endonuclease of the ...    41   0.004
MA2139 [L] COG3593 Predicted ATP-dependent endonuclease of the O...    40   0.007
AGpA32 [L] COG3593 Predicted ATP-dependent endonuclease of the O...    39   0.017
MA1866 [L] COG3593 Predicted ATP-dependent endonuclease of the O...    39   0.017
PM0282 Non COG                                                         37   0.059

>MJECL35 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family
           Mja Methanococcus jannaschii
          Length = 630

 Score = 40.8 bits (94), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 35/137 (25%)

Query: 19  QTHLHPRLQIPVIQELARIAKDK----KLQLLIATHSPTF-------------------I 55
           + HLHP      I+ LAR+ +D      +QL+I THSP F                   I
Sbjct: 315 EIHLHP----AYIRRLARVLEDLANNLNVQLIIVTHSPDFIATLKDKRFVIGVRKDSIKI 370

Query: 56  NPKIWHDEITGLSTTIFH-VSGKNISVANRGKLLDSLGAKVSDLLQTNCVIWVEGPSDRM 114
           N + +  E+  L+T IF+   G  +S +    L   LG      L ++  I VEG SDR+
Sbjct: 371 NFEGYPTEL--LATRIFYPFRGSRLSES----LARDLGVVPGYFLFSDVAILVEGNSDRI 424

Query: 115 YIRHWLEAMIKEYK-LP 130
            ++ +++ +I++ K LP
Sbjct: 425 ILQGYIDLLIEQLKNLP 441


>MA2139 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family
           Mac Methanosarcina acetivorans str.C2A
          Length = 689

 Score = 40.0 bits (92), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 20/145 (13%)

Query: 19  QTHLHPRLQIPVIQELARIAKDKKL--QLLIATHSPTFINPKIWHDEITGLSTTIFHV-- 74
           + HLHP LQ   ++ L    K+K +  Q+ + THS T I   +  D I  + +   H+  
Sbjct: 358 EAHLHPALQYNFLRFLKEEIKNKNISRQIFVTTHS-THITAAVGLDSIICMESHKDHILA 416

Query: 75  -------SGKNISVANRGKLLDSLGAKVSDLLQTNCVIWVEGPSDRMYIRHWLEAMIKEY 127
                  S K   + ++  +   L A  S++L +  VI+VEG ++++ +       + EY
Sbjct: 417 RYPSLVFSDKPDDIESKKYIERYLDATKSNMLFSKGVIFVEGLAEQLLV-----PRLAEY 471

Query: 128 K-LPAIYENEHFSFALYGGSCLGHF 151
           + LP   +  H +    GGS   HF
Sbjct: 472 RSLP--LDKCHIAVVGVGGSTFKHF 494


>AGpA32 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 622

 Score = 38.5 bits (88), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 19  QTHLHPRLQIPVIQELARIAK---DKKLQLLIATHSPTF-----INPKIWHDEITGLSTT 70
           + HLHP+LQ  +++ L+ I     ++ +Q+ + +HSP F     +N      E+   +  
Sbjct: 328 EAHLHPQLQAVLLKYLSSIQNGVGERDVQVFVTSHSPNFASIADLNSIACLYEVDD-NVA 386

Query: 71  IFHVSGKNISVANRGKLLDSLGAKVSDLLQTNCVIWVEGPSDRMYI 116
            FH    N +   + KL   L    ++L     VI+VEG ++ + +
Sbjct: 387 SFHPGSVNFAKGKKEKLKRYLDVTRAELFFARRVIFVEGAAELLMV 432


>MA1866 [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family
           Mac Methanosarcina acetivorans str.C2A
          Length = 613

 Score = 38.5 bits (88), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 25/131 (19%)

Query: 3   GSILSRVRASSKSGAV------QTHLHPRLQIPVIQELARIAKDKKLQLLIATHSPTFIN 56
           G ++ RV   S++         + HLHP+LQ  +      I + K +Q+ + +HSPT I 
Sbjct: 325 GDLIERVNRKSENYIALLIEEPEAHLHPQLQNILFNYFKNI-ESKNIQIFLTSHSPT-IT 382

Query: 57  PKIWHDEITGLSTTIFHVSGKNISV-----------ANRGKLLDSLGAKVSDLLQTNCVI 105
            K      T + T I   +  N+ +            ++  L   L    S L   N VI
Sbjct: 383 AK------TDIDTVILMENSFNVDILPLKDIEFEDETDKKYLQRFLDVTKSQLFFANGVI 436

Query: 106 WVEGPSDRMYI 116
           +VEG S+ M +
Sbjct: 437 FVEGISEAMLL 447


>PM0282 Non COG
          Length = 517

 Score = 37.0 bits (84), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 19  QTHLHPRLQIPVIQELARIAKDKKLQLLIATHSPTFIN--PK--IWHDEITGLSTTIFHV 74
           ++HLHP L    I+ L+ +  ++    ++ATHSP  +   PK  IW    TG+ T  + +
Sbjct: 379 ESHLHPPLLSAFIRTLSELLDNRNAIAIVATHSPVVLQEIPKSCIWKIVRTGIETKAYRL 438

Query: 75  S----GKNISVANR 84
                G+NI +  R
Sbjct: 439 VTETFGENIGILTR 452