BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2821.p         (276 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yhcA [GEPR] COG0477 Permeases of the major facilitator superf...    32   1.1  
AGc1182 [K] COG2186 Transcriptional regulators Atu Agrobacterium...    31   3.4  
BH0887 [E] COG0345 Pyrroline-5-carboxylate reductase Bha Bacillu...    30   4.3  
YGL134w Non COG                                                        30   5.2  
aq_1658 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related...    30   7.1  

>BS_yhcA [GEPR] COG0477 Permeases of the major facilitator superfamily Bsu
           Bacillus subtilis
          Length = 532

 Score = 32.3 bits (72), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 19/175 (10%)

Query: 22  WTLPPFTSTTVIETIAEALEICGPPRHEEILKKVMPWLYDLEHLS---------AMYIGR 72
           WT P   ST +I  IA    +    RH++ +     + YD+  LS         A+Y G 
Sbjct: 227 WTDPIVLSTVIIGAIAIVAFVVQQLRHDDPMLDFRVFKYDIFSLSSVINIIITVALYTGM 286

Query: 73  YKSTIHIRDFAPQIAESIEAAAGRLFHAAICSLMPVIEGVLQKMAVERVG-QPKRRNWML 131
           +   I++++     A  +++    L  A +  +M  I G+L     ++ G +P     +L
Sbjct: 287 FLLPIYLQNLVGFTA--LQSGLLLLPGAIVMLIMSPISGIL----FDKFGPRPLAIIGLL 340

Query: 132 PEIDTLIEREEQSPGRFEERIVMLQSLRAIFETRLF---VDTALDQSTSRLNRNG 183
             + T  +  + +       I+++ S+RA   + L    +   ++Q  +RLN +G
Sbjct: 341 VTVVTTYQYTQLTIDTPYTHIMLIYSIRAFGMSLLMMPVMTAGMNQLPARLNSHG 395


>AGc1182 [K] COG2186 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 257

 Score = 30.8 bits (68), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 7/46 (15%)

Query: 109 IEGVLQKMAVERVGQPKRRNWMLPEIDTLIE--REEQSPGRFEERI 152
           IEG+  ++A +R  +P RRN     +  ++E  RE    GRFEE +
Sbjct: 110 IEGMTAELAAQRATEPDRRN-----LAAIVERMREAHEAGRFEEEL 150


>BH0887 [E] COG0345 Pyrroline-5-carboxylate reductase Bha Bacillus
          halodurans
          Length = 267

 Score = 30.4 bits (67), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)

Query: 19 TVDWTLPPFTSTTVIETIAEALEICGPPRHEEILKKVMP 57
          T DWT        V+ET    L  C P  HE +LKK+ P
Sbjct: 55 TTDWT-------AVVETADVILLACPPAAHENVLKKLSP 86


>YGL134w Non COG
          Length = 433

 Score = 30.0 bits (66), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 173 DQSTSRLNRNGILHGLFHDYANQLNFYRLISILDSLCFAIGLKHGGSGFASSETDESKEY 232
           D S +R++   +L       AN++N Y   +I +   F +GL +GG G  SS  D+S   
Sbjct: 80  DSSKNRIHVEQLLES-----ANEMNNYLAQNIENINNFQVGLLNGGKGLYSSMGDDSSAC 134

Query: 233 LN 234
           +N
Sbjct: 135 IN 136


>aq_1658 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases
           and aldolases Aae Aquifex aeolicus
          Length = 187

 Score = 29.6 bits (65), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 186 HGLFHDYANQLNFYRLISILDSLC-FAIGLKHGGSG 220
           HG+F    N +  Y + S+L++ C   +G+++GG G
Sbjct: 152 HGVFAGAENLIRAYEITSVLENSCKILLGVEYGGKG 187