BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2815.p         (64 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2744 [K] COG3311 Predicted transcriptional regulator Sty Salm...    42   5e-04
RSc1869 Non COG                                                        33   0.23 
RSc0962 [K] COG3311 Predicted transcriptional regulator Rso Rals...    32   0.32 
Z0336 [K] COG3311 Predicted transcriptional regulator EcZ Escher...    31   0.71 
ECs0299 [K] COG3311 Predicted transcriptional regulator Ecs Esch...    31   0.71 

>STM2744 [K] COG3311 Predicted transcriptional regulator Sty Salmonella
          typhimurium LT2
          Length = 71

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 2  SDTLPQTGFVRLPVVLKFFPVSKSSWWSGIKSGRFPKGHKLSARVTAWKAEDIH 55
          +D  P++G VR+  V++F  +S+SS +  IK   FP+   LS+R+  + A +I 
Sbjct: 8  NDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIR 61


>RSc1869 Non COG
          Length = 86

 Score = 32.7 bits (73), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3  DTLPQTGFVRLPVVLKFFPVSKSSWWSGIKSGRFPKGHKL-SARVTAWKAEDIH 55
          + LP  GF R   +  F P S+ +       GRFP+   L S R  AW   ++H
Sbjct: 20 EALPADGFTRWSGLKAFVPFSRETVRKRELEGRFPQRQHLGSERCAAWPNRELH 73


>RSc0962 [K] COG3311 Predicted transcriptional regulator Rso Ralstonia
          solanacearum
          Length = 88

 Score = 32.0 bits (71), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 1  MSDTLPQTGFVRLPVVLKFFPVSKSSWWSGIKSGRFPKGHKLSARVTAWKAEDI 54
          +S+      F+RLP V+    +S+SS +  +  G FP+  +L+    AW   +I
Sbjct: 22 VSEEATAERFLRLPEVMSACGLSRSSIYGKVSCGEFPQPVRLTPSSVAWVDSEI 75


>Z0336 [K] COG3311 Predicted transcriptional regulator EcZ Escherichia
          coli O157:H7 EDL933
          Length = 86

 Score = 30.8 bits (68), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 10 FVRLPVVLKFFPVSKSSWWSGIKSGRFPKGHKLSARVTAWKAEDIHA 56
          F+RLP V+    +S+S+ +  I    FPK   L  +  AW   ++ A
Sbjct: 25 FLRLPEVMHLCGLSRSTVYDLISRDAFPKQIPLGGKNVAWAQSEVSA 71


>ECs0299 [K] COG3311 Predicted transcriptional regulator Ecs Escherichia
          coli O157:H7
          Length = 86

 Score = 30.8 bits (68), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 10 FVRLPVVLKFFPVSKSSWWSGIKSGRFPKGHKLSARVTAWKAEDIHA 56
          F+RLP V+    +S+S+ +  I    FPK   L  +  AW   ++ A
Sbjct: 25 FLRLPEVMHLCGLSRSTVYDLISRDAFPKQIPLGGKNVAWAQSEVSA 71