BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2797.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc1597 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 126 7e-29 AGl484 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 104 3e-22 STM2281 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 99 1e-20 RSp0942 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 98 2e-20 RSp1267 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 96 1e-19 >AGc1597 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 316 Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 18/284 (6%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 M +L L ++R+ + +ADLGSF+AAA L P VSLHI LE+++G L+ R + +P Sbjct: 22 MIDLDLRQMRSFMDVADLGSFSAAADKAGLTQPAVSLHIRLLEKQLGVRLIERVGRRAQP 81 Query: 61 SGIGATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSH 120 + G + AR++ A+E V G G +R+G A YLLP VL R+ Q+ Sbjct: 82 TAAGRDFLIHARRISEEVAHAIETVAPHRSGATGSLRIGTGATACIYLLPPVLGRIRQAM 141 Query: 121 PGIDVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVP-AAWHA 179 PGID+ + + + L L ++D +VALP S L ++ D ++A P A A Sbjct: 142 PGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGR-SLDIRDIHLDELVAVFPRGAVPA 200 Query: 180 PRVVTPAWLAAQPLIL-NAPETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYG 238 +T L+ + L+L TR +L +WF+A+G P ++L +AIK L AG G Sbjct: 201 RTTLTAETLSTRSLLLYEGGNTR--KLVDQWFSASGRTVQPAMELGSVEAIKKLAGAGLG 258 Query: 239 ATLLP-----HEASAQGRTVPLDPRIVMRPLRPALWRPLGIAHR 277 ++P HE +A G + R L P L R + +A R Sbjct: 259 LAVVPRMAVEHEGAASG--------LEWRSLEPPLERRIALAMR 294 >AGl484 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 302 Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 91/297 (30%), Positives = 141/297 (47%), Gaps = 37/297 (12%) Query: 1 MRELSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRP 60 M LS+ LR A+A +G F AA A ++ P +SL I ELEE IGAPL+ R Q+R Sbjct: 1 MIALSMKHLRYFDALAKIGHFGRAAEACAISQPALSLQIRELEELIGAPLVERGSRQIRL 60 Query: 61 SGIGATLVARARQLLAAAEQALEEVGRQVQG-LAGRVRLGASTGAIAYLLPQVLERLGQS 119 + +G R R +L + ++ L+++ R G L+GR+R+G YLLPQV++ L + Sbjct: 61 TALGDEFAERTRAILRSVDE-LQDLARAGHGPLSGRLRIGVIPTVAPYLLPQVIKTLTRH 119 Query: 120 HPGIDVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAAWHA 179 +PG++ + +Q+ + L+E LD+ +VALP S +P + VP Sbjct: 120 YPGLEARPREAVTQKLIEDLLEARLDMAIVALPVS------------EPALEEVPLFSEE 167 Query: 180 PRVVTPAWLAAQPL----------ILNAPETRLSRLSAEWFAAAGEHPLPRIQLNFN--D 227 +V P A P+ +L E R A F + P PR+ + + Sbjct: 168 FILVRPMEDAGMPVPSADKLGEMRLLLLEEGHCFRNQALSFCSTTNAP-PRVLMEGSSLS 226 Query: 228 AIKSLVAAGYGATLLPHEASAQGRTVPLDPRI----VMRPLRPALWRPLGIAHRAAQ 280 + +V AG G TL+P A V ++ R+ V R P R +GI R + Sbjct: 227 TLVQMVGAGIGVTLIPQMA------VDMETRLSTVSVFRLAEPRPSRTIGIVWRKSN 277 >STM2281 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 292 Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 15/295 (5%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQ-RSQVRPSG 62 ++L ++ L+A+ + G F A++ L++ VS IS LEE +G +L+R+ R ++ + Sbjct: 1 MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELGVDILIRERRKEIELTA 60 Query: 63 IGATLVARARQLLAAAEQALEEVGRQVQGLAGR-VRLGASTGAIAYLLPQVLERLGQSHP 121 G+ +V R + A++E+ Q + R +R+G A A +LP V+ HP Sbjct: 61 AGSRIVRHLRAIQRDV-NAVKEIAEQEKKNPARTLRIGCFPSACACILPGVIRYFESHHP 119 Query: 122 GIDVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAA--WHA 179 + + + S + L +GS+D G V PV G+ P RD VP A Sbjct: 120 NVKIIPYEENSTAIIDSLQDGSIDAGFVPF---PVNGMYCVPIYRDKFTVVVPENHPLAA 176 Query: 180 PRVVTPAWLAAQPLILNAPETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYGA 239 VT L +PLI++ LS ++ F G P+ + + N D + + G G Sbjct: 177 NSTVTVEELMDEPLIVSKGRYELSIMA--LFKEKGIEPIFKYEFNHPDTALNFIRQGLGI 234 Query: 240 TLLPHEASAQGRTVPLDPRIVMRPLRPALWRPLGIAHRAAQLEPATLHVLQALWE 294 LLP E + + T ++ L P +R + + + +E + L +LQ E Sbjct: 235 ALLP-ELTLKATT----GKLCSVALEPTFYRQISLLAKEPPVEGSPLFLLQKCME 284 >RSp0942 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 313 Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 126/243 (51%), Gaps = 4/243 (1%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 ++ RLR V I D+GS AA LH+A P++S ++ LE + LLLR + V P+ Sbjct: 1 MNFRRLRYFVKIVDVGSVTQAADLLHVAQPSLSQQMATLEGEVRQQLLLRTKQGVVPTEA 60 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQS-HPG 122 G L A+ +L +QA E+ QGL+G V +G + G A L L R ++ HPG Sbjct: 61 GKVLYRHAQAILRQVDQAKLEMKAAGQGLSGAVSVGLAPGTAASALALPLLRAVRARHPG 120 Query: 123 IDVQIHILTSQETLSQLV-EGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAAWHAPR 181 I + ++ T TLS+L+ G +D+ ++ ++ V GL+ P R+P+ P++ AP Sbjct: 121 IVLYLN-ETYGSTLSELIMNGRMDMAVLYGGKTVVHGLSFLPLLREPLYVVGPSSMPAPP 179 Query: 182 VVTP-AWLAAQPLILNAPETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYGAT 240 P A L L L P + RL + F A G P ++ +K++VA G GAT Sbjct: 180 DEVPLAMLGEIDLYLARPYNVVRRLVDDAFGAIGMAPKVSAEIESAGTLKAIVADGLGAT 239 Query: 241 LLP 243 +LP Sbjct: 240 ILP 242 >RSp1267 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 294 Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 5/247 (2%) Query: 4 LSLDRLRTLVAIADLGSFAAAARALHLAPPTVSLHISELEERIGAPLLLRQRSQVRPSGI 63 L LR + A+ GS A A HL + S I +E +G PLL R R V + Sbjct: 3 FDLTDLRLFLHTAESGSITAGAERAHLTLASASARIRGMEAALGVPLLTRNRRGVETTAA 62 Query: 64 GATLVARARQLLAAAEQALEEVGRQVQGLAGRVRLGASTGAIAYLLPQVLERLGQSHPGI 123 G TLV AR +L E+ E+G +GL G VRL ++T A+ LP+ L HP + Sbjct: 63 GRTLVHHARVVLQQMERMRGELGEYARGLKGHVRLLSNTAAMTEFLPETLSAFLAQHPEV 122 Query: 124 DVQIHILTSQETLSQLVEGSLDIGLVALPQSPVGGLTVKPWRRDPVMAFVPAAWH---AP 180 D+ + L S E + + +G DIG+V + GL P+R D + V A H A Sbjct: 123 DIDLEELVSHEIVEAVAQGRADIGIVN-DAVDLSGLETFPFRHDR-LVLVTARDHPLAAR 180 Query: 181 RVVTPAWLAAQPLILNAPETRLSRLSAEWFAAAGEHPLPRIQLNFNDAIKSLVAAGYGAT 240 R + + + + L A A AG R++L DA+ +V G Sbjct: 181 REIAFVDALQEDFVGLTGDNALQAYLAGHAARAGHRLKYRVRLRSFDAVCRMVERSVGVG 240 Query: 241 LLPHEAS 247 ++P A+ Sbjct: 241 VIPEHAA 247