BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2781.p (268 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1119 [L] COG0084 Mg-dependent DNase Rso Ralstonia solanacearum 256 3e-68 yjjVm [L] COG0084 Mg-dependent DNase Eco Escherichia coli K12 186 6e-47 STM4564 [L] COG0084 Mg-dependent DNase Sty Salmonella typhimuriu... 167 2e-41 PA3564 [L] COG0084 Mg-dependent DNase Pae Pseudomonas aeruginosa 166 5e-41 VC2353 [L] COG0084 Mg-dependent DNase Vch Vibrio cholerae 163 4e-40 >RSc1119 [L] COG0084 Mg-dependent DNase Rso Ralstonia solanacearum Length = 271 Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 145/270 (53%), Positives = 176/270 (65%), Gaps = 12/270 (4%) Query: 1 MWVDTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYAL 60 MW+DTHCHLDA EF AV ++A AGVR IV+PAIAR NF V LA YAL Sbjct: 1 MWIDTHCHLDAREFDADRDAVIEQARVAGVRHIVVPAIARWNFDVVRALAHRQAGCCYAL 60 Query: 61 GIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFA 120 GIHPL A DL LR +AA++DDP FV IGEIGLDFF+P DP E+Q + Sbjct: 61 GIHPLCAAQASDDDLIELRRQVAASMDDPRFVAIGEIGLDFFIP----DPQVERQNAVYQ 116 Query: 121 EQLKLARDFDLPVLLHVRRSQDIILKYLRRIRVPGGIAHAFNGSHQQAENFVELGLHLGF 180 QLK+AR+FDLPVLLHVR+SQD + R V GIAHAFNGS QA +++E G LGF Sbjct: 117 AQLKIAREFDLPVLLHVRKSQDQVRSAAARAGVRRGIAHAFNGSDDQARHYIETGFKLGF 176 Query: 181 GGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDT--------NTPDQIPRIG 232 GG +TF R+ +IRRLAAE+PL SIVLETDAPD++PAWL D N P ++ I Sbjct: 177 GGVLTFSRAHRIRRLAAEMPLESIVLETDAPDLAPAWLADDQFSEQVGTRNAPAEVAGIA 236 Query: 233 AVLAELRQLSLTEVATTTTANAQVALPRLA 262 A LA LR +++ +A N+ A+PRLA Sbjct: 237 AALAALRGIAVDTLAAQARRNSVEAIPRLA 266 >yjjVm [L] COG0084 Mg-dependent DNase Eco Escherichia coli K12 Length = 259 Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 105/254 (41%), Positives = 148/254 (58%), Gaps = 7/254 (2%) Query: 2 WVDTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYALG 61 ++DTHCH D F A AAQAGV I++PA NF++V LA ALG Sbjct: 5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALG 64 Query: 62 IHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFAE 121 +HP + L+ L++A+ V +GEIGLD F +DP E+Q++ E Sbjct: 65 LHPGMLEKHSDVSLEQLQQALERR--PAKVVAVGEIGLDLF----GDDPQFERQQWLLDE 118 Query: 122 QLKLARDFDLPVLLHVRRSQDIILKYLRRIRVP-GGIAHAFNGSHQQAENFVELGLHLGF 180 QLKLA+ +DLPV+LH RR+ D + +L+R +P G+ H F+GS QQAE FV+LG +G Sbjct: 119 QLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGV 178 Query: 181 GGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAVLAELRQ 240 GG +T+PR+ + R + A+LPL+S++LETDAPD+ N P+Q R+ AVL ELR+ Sbjct: 179 GGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRR 238 Query: 241 LSLTEVATTTTANA 254 E+A N Sbjct: 239 EPADEIAQALLNNT 252 >STM4564 [L] COG0084 Mg-dependent DNase Sty Salmonella typhimurium LT2 Length = 257 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 146/254 (57%), Gaps = 10/254 (3%) Query: 2 WVDTHCHLDAGEF-GDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVYAL 60 ++DTHCH D F GD A++ A +AGV I++PA +F +V LA + AL Sbjct: 5 FIDTHCHFDFPPFTGDERASI-QRACEAGVEKIIVPATEAAHFPRVLALAARFPSLYAAL 63 Query: 61 GIHPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFA 120 G+HP+ + D D L++A+A + V +GEIGLD + ++DP +QE F Sbjct: 64 GLHPIVIERHADDDSDKLQQALAQQQN---VVAVGEIGLDLY----RDDPQFARQERFLD 116 Query: 121 EQLKLARDFDLPVLLHVRRSQDIILKYLRRIRVP-GGIAHAFNGSHQQAENFVELGLHLG 179 QL+LA+ +DLPV+LH RR+ D + +L+R +P G+ H F GS QQAE FV LG +G Sbjct: 117 AQLQLAKRYDLPVILHSRRTHDKLAMHLKRQDLPRTGVVHGFAGSLQQAERFVRLGYKIG 176 Query: 180 FGGAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAVLAELR 239 GG +T+PR+ + R + A LPL +++LETDAPD+ N P+Q R+ L ELR Sbjct: 177 VGGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQPNRPEQAARVFDALCELR 236 Query: 240 QLSLTEVATTTTAN 253 +A T N Sbjct: 237 PEPAEVIADTLYRN 250 >PA3564 [L] COG0084 Mg-dependent DNase Pae Pseudomonas aeruginosa Length = 225 Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 140/223 (62%), Gaps = 7/223 (3%) Query: 34 VIPAIARVNFSQVAQLARELGNAVYALGIHPLYVPTAEPADLDVLREAIAAALDDPLFVG 93 ++ + R N+ +V LA+ ALG+HP+Y+ P LD LR+ + + Sbjct: 1 MVLGVYRENWQRVWDLAQAEDGLYAALGLHPVYLARHRPQHLDDLRQWLQRLRGETKLCA 60 Query: 94 IGEIGLDFFVPALKEDPLREKQEFFFAEQLKLARDFDLPVLLHVRRSQDIILKYLRRIRV 153 +GEIGLD+++ L R+ Q+ F QL+LA +F LP L+HVRR+ + L+RIR+ Sbjct: 61 VGEIGLDYYLEHLD----RDAQQALFEAQLRLAAEFRLPALIHVRRAHAATIATLKRIRL 116 Query: 154 PG-GIAHAFNGSHQQAENFVELGLHLGFGGAMTFPRSLQIRRLAAELPLSSIVLETDAPD 212 GI HAF GS ++A +++LG LG GGA T+P++ ++R++AAELP +IVLETDAPD Sbjct: 117 ERRGIIHAFAGSREEAREYLKLGFRLGLGGAPTWPQANRLRKVAAELPAEAIVLETDAPD 176 Query: 213 ISPAWLHP-DTNTPDQIPRIGAVLAELRQLSLTEVATTTTANA 254 ++P+ +HP N+P+ +P I LAELR + E+A +++ NA Sbjct: 177 MAPS-MHPGQRNSPEHLPDICRALAELRGVDAEELAASSSRNA 218 >VC2353 [L] COG0084 Mg-dependent DNase Vch Vibrio cholerae Length = 283 Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 143/255 (56%), Gaps = 9/255 (3%) Query: 4 DTHCHLDAGEFGDRSAAVADEAAQAGVRAIVIPAIARVNFSQVAQLARELGNAVY-ALGI 62 DTHCH D F +AAQ GVR +V+P+I ++ V +LA+ + +Y ALG Sbjct: 24 DTHCHFDFPPFTATPELELQKAAQHGVRRLVVPSIGPQDWQAVTELAQRFPSTIYYALGF 83 Query: 63 HPLYVPTAEPADLDVLREAIAAALDDPLFVGIGEIGLDFFVPALKEDPLREKQEFFFAEQ 122 HPLY+ + P L L +A+ A + V +GE GLD + D QE Q Sbjct: 84 HPLYLDASSPTHLPALEKALMQA--EQACVAVGECGLDGMI-----DVDVALQEQMLIAQ 136 Query: 123 LKLARDFDLPVLLHVRRSQDIILKYLRRIRVP-GGIAHAFNGSHQQAENFVELGLHLGFG 181 L +A LPV+LH RR+ + +L+ L++ R GG+ HAF+GS Q+A+ FV+LG +G G Sbjct: 137 LSMASQAKLPVILHSRRTHNRLLQLLKQQRFQQGGVLHAFSGSVQEAQQFVDLGFKIGVG 196 Query: 182 GAMTFPRSLQIRRLAAELPLSSIVLETDAPDISPAWLHPDTNTPDQIPRIGAVLAELRQL 241 G +T+PR+ + R+ A LP+ IVLETDAPD+ N P Q+ ++ LAEL+ + Sbjct: 197 GVITYPRANKTRQAIAALPVEHIVLETDAPDMPLNGFQGQANHPAQLAKVLETLAELKGV 256 Query: 242 SLTEVATTTTANAQV 256 S +A N+Q+ Sbjct: 257 SAQYLAPILWQNSQM 271