BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2774.p (537 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc01370 [T] COG3706 Response regulator containing a CheY-like r... 139 2e-32 PA3177 [T] COG2199 FOG Pae Pseudomonas aeruginosa 134 5e-31 aq_265_2 [T] COG2199 FOG Aae Aquifex aeolicus 133 9e-31 CC1850 [T] COG2199 FOG Ccr Caulobacter vibrioides 133 9e-31 BH2234 [T] COG3706 Response regulator containing a CheY-like rec... 131 5e-30 >SMc01370 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Sme Sinorhizobium meliloti Length = 455 Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 109/184 (59%), Gaps = 6/184 (3%) Query: 347 EKAEDRIHALEQQLLQMGELVREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDL 406 + DR+ A QQ + EL D LTG NRR ++ L I A R PL + + D+ Sbjct: 273 KHCNDRLRASVQQTI---ELAVTDDLTGLHNRRYLENHLKLLIDRATTRGRPLSICITDI 329 Query: 407 DDFKRINDTHGHATGDEVLVHLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQII 466 D FKR+NDTHGH GD+VL +R T+R D+ RFGGEEFVV+MP+T P+ A + Sbjct: 330 DRFKRVNDTHGHDAGDDVLREFANRVRATVRGADLACRFGGEEFVVVMPDTTPEMAAIVA 389 Query: 467 TRVQRELTKRIF--MHESQRLLITFSAGLALYYP-GESQAELLKRADVALYKAKNAGKNR 523 R++ + R F + L +T S G+A P G++ LLKRAD+ALY+AKN G+NR Sbjct: 390 ERLRLAVESRGFDIPQAATVLNVTASLGIATLRPHGDTAEALLKRADMALYQAKNGGRNR 449 Query: 524 IVFA 527 +V A Sbjct: 450 VVAA 453 >PA3177 [T] COG2199 FOG Pae Pseudomonas aeruginosa Length = 307 Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 101/158 (63%) Query: 370 DQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLVHLV 429 D LTG+ NR MD++L RE+ A R PL V +LD+D FKR+ND +GHA GDE L + Sbjct: 150 DALTGTGNRIAMDQALGRELELARRNLQPLSVLMLDIDHFKRVNDHYGHAVGDEALKAVA 209 Query: 430 QVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQRELTKRIFMHESQRLLITF 489 + I++ LR +D++ RFGGEEF+VL+ T Q A + R+++ + + + H + L ++ Sbjct: 210 ETIKDHLRNVDMVFRFGGEEFLVLLSSTPLQAACMVGERLRQAVEELDYRHAGEPLKLSI 269 Query: 490 SAGLALYYPGESQAELLKRADVALYKAKNAGKNRIVFA 527 S G A PGE +LL+R D ALY+AK G+NR+ A Sbjct: 270 SLGCADLRPGEGSDDLLRRVDEALYEAKRDGRNRLRCA 307 >aq_265_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 168 Score = 133 bits (335), Expect = 9e-31, Method: Composition-based stats. Identities = 68/162 (41%), Positives = 107/162 (66%), Gaps = 2/162 (1%) Query: 367 VREDQLTGSLNRRGMDESLDREIANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLV 426 ++ D LTG LNRR + L + +L ETP +A++D+D+FK+INDT+GH GD+VL Sbjct: 7 LKVDPLTGLLNRRVLPYILRDVLELSLYTETPFSIAMVDIDNFKKINDTYGHLFGDKVLK 66 Query: 427 HLVQVIRETLRRLDVIARFGGEEFVVLMPETEPQDAVQIITRVQRELTKRIFMHESQRLL 486 + ++I++ LRR D + R+GGEEF++LMP TE +DAV+I+ ++++E+ + + + Sbjct: 67 EVAKIIKKNLRRSDYVFRYGGEEFLILMPSTELKDAVRILEKIRKEVENTPICWQGKEIR 126 Query: 487 ITFSAGLA--LYYPGESQAELLKRADVALYKAKNAGKNRIVF 526 +T S G+ +Y +S E +K AD LY AK GKNR+VF Sbjct: 127 VTISVGVCSDVYNGLKSPEEYIKCADEKLYLAKRTGKNRVVF 168 >CC1850 [T] COG2199 FOG Ccr Caulobacter vibrioides Length = 353 Score = 133 bits (335), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/260 (31%), Positives = 128/260 (49%), Gaps = 17/260 (6%) Query: 284 LSAMVSTTDNYQRTIRGFSQQISQAG-------NIADLNSVLSEIMTETQKAQEEATRSR 336 L A+ N Q++ F Q+++ A ++A + +V+ I T++ +E Sbjct: 97 LEAVSKAIQNAQKSNAAFGQELAGASKSLDTHTDVASIKAVVGSIAEATRRVHKENQSLE 156 Query: 337 DAMEDARQEVEKAEDRIHALEQQLLQMGELVREDQLTGSLNRRGMDESLDREIANALRRE 396 + D+ EVE+ L + L Q+ D LT NR+ D+ LDR A A Sbjct: 157 ARLADSTAEVER-------LREHLEQVRRDATTDGLTNLANRKAFDDELDRACAEAEEGG 209 Query: 397 TPLCVALLDLDDFKRINDTHGHATGDEVLVHLVQVIRETLRRLDVIARFGGEEFVVLMPE 456 T +C+A+LD+D FK NDT GH TGD+V+ ++ VI AR+GGEEF ++ P Sbjct: 210 TTICLAVLDIDHFKGFNDTWGHQTGDQVIRYVASVIGRVAAPPRFAARYGGEEFAMIFPR 269 Query: 457 TEPQDAVQIITRVQRELTKRIFMHESQR---LLITFSAGLALYYPGESQAELLKRADVAL 513 + ++ E++ R+ S IT S+G A PGES +++RAD AL Sbjct: 270 EAASVVATTLEEIRVEVSSRMLKRRSTNEDLGAITVSSGFAERKPGESGHSVMERADAAL 329 Query: 514 YKAKNAGKNRIVFAEPPPAA 533 Y +K G+NR+ AE P A Sbjct: 330 YASKRGGRNRVTAAESMPGA 349 >BH2234 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Bha Bacillus halodurans Length = 314 Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 119/197 (60%), Gaps = 5/197 (2%) Query: 329 QEEATRSRDAMEDARQEVEKAEDRIHALEQQLLQMGELVREDQLTGSLNRRGMDESLDRE 388 ++E++R R Q V+ E++ L+ ++ ++ L R D LT +NRR M E + E Sbjct: 119 KQESSRKR-----LEQHVKVLEEQNEKLKGKIQKVDRLSRVDFLTNLMNRRDMQEKIRAE 173 Query: 389 IANALRRETPLCVALLDLDDFKRINDTHGHATGDEVLVHLVQVIRETLRRLDVIARFGGE 448 I ++R +A++D+D FK INDT+GH GD VL H V ++ ++R D ++R+GGE Sbjct: 174 INRSIRHGRSFTLAIVDIDFFKNINDTYGHDCGDHVLKHFVSTLKNSVRSSDYVSRWGGE 233 Query: 449 EFVVLMPETEPQDAVQIITRVQRELTKRIFMHESQRLLITFSAGLALYYPGESQAELLKR 508 EF++L PET+ ++ + ++++++ + +++ + IT + G++ Y P EL+K Sbjct: 234 EFLLLFPETKLEEGKRACEKIRQKINESPVIYKGMSISITATFGISEYRPSVRIEELIKA 293 Query: 509 ADVALYKAKNAGKNRIV 525 AD ALYK K GKN++V Sbjct: 294 ADDALYKGKKTGKNQVV 310