BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2771.p         (148 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MTH445 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus      83   2e-16
DR0731 [T] COG0784 FOG Dra Deinococcus radiodurans                     82   4e-16
alr1967 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                        74   1e-13
AGc3618 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58...    74   1e-13
DRA0049 [T] COG0784 FOG Dra Deinococcus radiodurans                    74   1e-13

>MTH445 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus
          Length = 145

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 1   MSRPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDH--PDTLP 58
           M+   IL+V+ +P   EL   +L ++ L     W +D   A++ +F+  +     P+ LP
Sbjct: 2   MTDADILLVEDNPTDAELTIRALKKNNLANKLHWVKDGAEALDYIFASGSYSDRDPENLP 61

Query: 59  CLILLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPV 118
            LILL+ R+P+++G+++L  ++    T  +PV++  +S ++ D   S+  G N Y+ KPV
Sbjct: 62  KLILLDLRMPKVDGLEVLQEIKRNDSTSKIPVVVLTSSKEDRDIVESYKLGVNSYVSKPV 121

Query: 119 DAREFMELINQTVAHWL 135
           +  EF+  ++    +W+
Sbjct: 122 EFDEFISAVSTLGFYWM 138


>DR0731 [T] COG0784 FOG Dra Deinococcus radiodurans
          Length = 137

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 1   MSRPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCL 60
           M   SIL+VD +P  VEL   +L       +    +      E+L      D P+  P L
Sbjct: 1   MDHCSILLVDDNPHDVELTLLALEVG----SGAKVKVTTSGREALDFLERCDCPEKRPDL 56

Query: 61  ILLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDA 120
           ILL+  +P+M G+++L  LR+   TR +PV+M  TS +E D   S+A GAN Y+VK  + 
Sbjct: 57  ILLDLNMPQMNGLEILDALRAGEETRDIPVVMLTTSSEERDQQASYAHGANGYVVKAFNL 116

Query: 121 REFMELINQTVAHWLP 136
            +F E + Q    WLP
Sbjct: 117 EQFGEALAQIKRRWLP 132


>alr1967 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 148

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 6   ILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHA---VDHPDTLPCLIL 62
           +L+V+ +P  VEL R +L  SK+       ED   AM  L        V HPD    ++L
Sbjct: 12  VLLVEDNPGDVELTRIALEDSKISVHLSVVEDGVEAMAFLRKQDKYANVPHPD----IVL 67

Query: 63  LEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDARE 122
           L+  LPR +G ++L  +++  + + +PV++  TS  E D  +++   AN Y+ KPVD  +
Sbjct: 68  LDFNLPRKDGREVLAEIKTDSYLKRIPVVVLTTSQAEEDILKAYNLAANCYITKPVDFDQ 127

Query: 123 FMELINQTVAHWLPLA 138
           F+ ++      W  + 
Sbjct: 128 FVRIVQSIENFWFAIV 143


>AGc3618 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 156

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 2/133 (1%)

Query: 3   RPSILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESL-FSPHAVDHPDTLPCLI 61
           RP IL+V+ +P  +EL   +L + +L        D   A++ L  +    + P   P ++
Sbjct: 10  RP-ILLVEDNPRDLELTLTALEKCQLANEVVVARDGTEALDYLNVTGSHHNRPGGDPAVV 68

Query: 62  LLEPRLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDAR 121
           LL+ +LP+++G+++L  ++   H R +PV+M  +S +E D  +S+  G N ++VKPV+  
Sbjct: 69  LLDLKLPKVDGLEVLQTVKGSDHLRHIPVVMLTSSREEQDLVKSYELGVNAFVVKPVEFN 128

Query: 122 EFMELINQTVAHW 134
           +F + I      W
Sbjct: 129 QFFKAIQDLGVFW 141


>DRA0049 [T] COG0784 FOG Dra Deinococcus radiodurans
          Length = 149

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 6   ILMVDPSPESVELARFSLWRSKLDCAFGWFEDAERAMESLFSPHAVDHPDTLPCLILLEP 65
           +L+V+ +   + L   +L  S +        D   A+E L        P   P LILL+ 
Sbjct: 11  LLLVEDNAADIFLMEMALEYSSVHTELLVARDGLEALE-LLEQAKTGGP--FPDLILLDL 67

Query: 66  RLPRMEGVDLLHMLRSQPHTRALPVIMFATSYDEADATRSHAAGANDYLVKPVDAREFME 125
            +PR++G +LL  LR+ PH   LP I+  TS D +D  R++A  AN YL KP    +F++
Sbjct: 68  NMPRVDGFELLQALRADPHLAHLPAIVLTTSNDPSDVKRAYALQANSYLTKPSTLEDFLQ 127

Query: 126 LINQTVAHWLPLA 138
           LI +  A+W   A
Sbjct: 128 LIERLTAYWFGTA 140