BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2770.p (549 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 327 4e-89 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 321 3e-87 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 319 1e-86 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 318 2e-86 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 308 2e-83 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 327 bits (839), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 211/472 (44%), Positives = 303/472 (64%), Gaps = 24/472 (5%) Query: 51 NQLK--GYLADSRLAGYRLSVFANLADKSELQKAVDAANKSLDEEFAHYERDLIFDDQDR 108 NQ+K GY A+ L+ L + K++ A ++ + + E+ L+ DQ + Sbjct: 56 NQIKNNGYKANGILS--NLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEK-LLTTDQGK 112 Query: 109 ALIQADQANIEVYRKALVPFFAAAYANDMEGVRASLQAGTPLAISAAAAKKGFED-HILI 167 AL + Y ++ FFA A++++ RA Q +D + ++ Sbjct: 113 ALFKEQFDARSAYGASVRKFFALVDADNVQEARALYQGDMSR----------LQDRYYVL 162 Query: 168 GRKKID--AIKLESD--EAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQQTF 223 K +D A ++E D EA A I +IV+AVL T +L I + ++ R Sbjct: 163 VDKMVDHQAGEMEHDVSEAAAQGANAKIQMIVLAVLAT-LLAIATGAFITRTITRPINHA 221 Query: 224 EHVSQTL---DLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIA 280 H+++ + +L+ + V+ DEIG AA ++ + +VS R TD++T A+ ++A Sbjct: 222 MHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVA 281 Query: 281 AGNADLSARTEQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVR 340 +GN DLS+RTEQQA++LEE+A+++EQLTS V QN +NA++A+ LA +AS +A++GGD V Sbjct: 282 SGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVD 341 Query: 341 QVVDTMNSINHSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 400 + + TM++IN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRS Sbjct: 342 EAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRS 401 Query: 401 LAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVE 460 LAQRSAAAAKEIK LI+DSV V +G+ VE+AG + ++V +Q VT IV+ I+ +S E Sbjct: 402 LAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSRE 461 Query: 461 QSAGISQVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL 512 QS GI Q+N+AI+QMD+ TQ+NA+LVEE+A AAQALQ QA +L +V+ F+L Sbjct: 462 QSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKL 513 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 321 bits (822), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 191/335 (57%), Positives = 251/335 (74%), Gaps = 1/335 (0%) Query: 178 ESDEAYAFALRTMIAVIVVAVLLTGVLGIQMLRIVIHSLGRIQQTFEHVSQTLDLSRPVP 237 +S +AYA +IA IV+A++++ +LR ++ L F+ ++ DL++PV Sbjct: 179 DSQQAYARIRNLVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAG-DLTQPVR 237 Query: 238 VERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSARTEQQAAAL 297 ++R DE+GH ++ A + + V R ++S+ A +QIAAGNADLS RTE QA++L Sbjct: 238 IDRRDEMGHLLEGLARMQAALTDTVRRVRHGSESIGAATKQIAAGNADLSQRTEGQASSL 297 Query: 298 EESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSINHSSRKIV 357 EE+ASS+E++TS+V QN +NARQA++LA SAS +ASQGG VV VV TM I+ SSR + Sbjct: 298 EETASSMEEMTSIVRQNADNARQASQLADSASAVASQGGAVVTDVVATMREISASSRTVS 357 Query: 358 DIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELID 417 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIKE+I+ Sbjct: 358 EIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKEMIE 417 Query: 418 DSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQAISQMDQ 477 S+ KV +GSKL EQAGSTM IV S++RVT I+ IA AS EQS+GI QVN+A++ MD+ Sbjct: 418 ASLAKVDTGSKLAEQAGSTMENIVTSIRRVTDIMGEIAAASSEQSSGIEQVNKAVTLMDE 477 Query: 478 GTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL 512 TQQNAALVE+AAAAA++L+ QA+ L +A F+L Sbjct: 478 ATQQNAALVEQAAAAAESLEEQAQALNEAIAAFRL 512 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 319 bits (817), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 174/282 (61%), Positives = 223/282 (79%), Gaps = 1/282 (0%) Query: 231 DLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADLSART 290 DLSR + V+ D+ A ++ A + +V+T R++ +SV A+ QIA GN DLS RT Sbjct: 233 DLSRVIAVD-ADDRTSLLAKLKEMQASLSGIVATVRNNAESVATASAQIAQGNQDLSHRT 291 Query: 291 EQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTMNSIN 350 EQQA+AL+E+++++++L S V N ENARQAN+LA AS +A++GG+VV QVV M IN Sbjct: 292 EQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAEGGEVVSQVVGMMKGIN 351 Query: 351 HSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 410 S+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAK Sbjct: 352 DGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAK 411 Query: 411 EIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGISQVNQ 470 EIK LI SV++V G+ LV++AG+TM +IV ++QRV+ IVA I+ AS EQS+G+SQV Q Sbjct: 412 EIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEISSASAEQSSGVSQVGQ 471 Query: 471 AISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL 512 A+SQMD+ TQQNAALVE++AAAA +LQGQA++L VAVF+L Sbjct: 472 AVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 318 bits (815), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 203/449 (45%), Positives = 286/449 (63%), Gaps = 15/449 (3%) Query: 91 DEEFAHYERDLIFDDQDRALIQADQANIEVYRKALVPFFAAAYANDMEGVRASLQAGTPL 150 ++ F YE+ QD + + + E Y AL N ME + + P Sbjct: 102 EDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELI-----NLMETNKINEFFNHPT 156 Query: 151 AISAAAAKKGFEDHILIGRKKIDAIKLESDEAYAFALRTMIAVIVVAVLLTGVLGIQMLR 210 ++ + +++ D+ +S+++++FA+ +I V+VV +++ ++ + M + Sbjct: 157 TSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQ 216 Query: 211 IVIHSLGRIQQTFEHVSQTLDLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTD 270 I+IH L + +H++ DL++ + V +E+G AA+ + + +V +V R D Sbjct: 217 ILIHPLNHLIAHIKHIANG-DLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGAD 275 Query: 271 SVTVAARQIAAGNADLSARTEQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASH 330 ++ A +IA GN DLSARTEQQAA+LEE+A+S+EQLT+ V QN ENARQA++LA SAS Sbjct: 276 AIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASE 335 Query: 331 IASQGGDVVRQVVDTMNSINHSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRG 390 A +GG VV VV TM+ I SS+KI DI +VIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 336 TAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRG 395 Query: 391 FAVVASEVRSLAQRSAAAAKEIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQI 450 FAVVA EVR+LAQRSA AAKEIK LIDDSV++V GS LVE AG TM +IV++V RVT I Sbjct: 396 FAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDI 455 Query: 451 VASIADASVEQSAGISQVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVF 510 + IA AS EQS GI Q+ QA+++MD+ TQQNA+LVEE+A+AA +L+ QA L ++VF Sbjct: 456 MGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVF 515 Query: 511 QLGSRTALPVRSVDVTPATNRLPDAAAPV 539 V SVD + +T+ + P Sbjct: 516 ---------VLSVDNSNSTSDVRKVKQPT 535 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 308 bits (790), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/286 (63%), Positives = 227/286 (79%) Query: 227 SQTLDLSRPVPVERMDEIGHTAAAFNKLLARIVEVVSTTRSSTDSVTVAARQIAAGNADL 286 S + DL++ +P + DE+ A +FN ++ V+ R +DSV AA++IAAGNADL Sbjct: 330 SGSGDLTKRLPADGQDEVAQIARSFNAFADKLTAVLQQIRLGSDSVRSAAQEIAAGNADL 389 Query: 287 SARTEQQAAALEESASSLEQLTSVVLQNTENARQANELAQSASHIASQGGDVVRQVVDTM 346 S RTE+QA++LEE+ASS+E+LTS+V QN +NARQA+ LA +AS +A++GG VV QVV TM Sbjct: 390 SQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVATRGGSVVGQVVQTM 449 Query: 347 NSINHSSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 406 IN SS+KI DII VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA Sbjct: 450 GGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA 509 Query: 407 AAAKEIKELIDDSVDKVGSGSKLVEQAGSTMSEIVDSVQRVTQIVASIADASVEQSAGIS 466 AAKEIK LI DSVD+V +G+ LV+QAG TM+EIV++V+RVT I+ I+ AS EQS+GI Sbjct: 510 GAAKEIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDIMGEISAASEEQSSGIE 569 Query: 467 QVNQAISQMDQGTQQNAALVEEAAAAAQALQGQAEKLESVVAVFQL 512 QVNQA++QMDQ TQQNAALVE+AAAAA++L+ QA L V F+L Sbjct: 570 QVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQARNLNDAVGSFRL 615