BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2747.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1128 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 287 2e-77 AGpAbx130 [K] COG0583 Transcriptional regulator Atu Agrobacteriu... 207 2e-53 mll1582 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 200 3e-51 mll2472 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 196 4e-50 ycaN [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 190 3e-48 >PA1128 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 303 Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/296 (47%), Positives = 200/296 (67%) Query: 1 MSLLDHIEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRA 60 M E +DL VF+TI+R SF+ +A +LG++ SA SH+M+ LE RL +LL R+SR+ Sbjct: 1 MPAFTRSELADLNVFMTIVRRRSFRHSAQELGVSTSALSHSMRNLEARLGVKLLNRTSRS 60 Query: 61 ISPTAAGSELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFV 120 + PT AGS LAA+LE+GF+ I ALG+L++ +G LR+NV DA+ LL+ P + F Sbjct: 61 VVPTDAGSALAAKLEDGFQVIGEALGELDAYRTSPVGRLRLNVPRDASRLLLGPVLRRFT 120 Query: 121 RQCPKVKLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDR 180 P ++L + V+D+ +DIV++GYDAGIRYG VP+ MV PLT RWV AASPDYL R Sbjct: 121 EAYPDLQLELSVEDRMVDIVADGYDAGIRYGGTVPQDMVAVPLTGELRWVVAASPDYLAR 180 Query: 181 HGRPLTLEDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAG 240 HG P +DL +H C+++ LGDNS Y+WE G G+ + VPG ++N + +AAA G Sbjct: 181 HGVPQRPDDLLRHACIRMRLGDNSFYKWELGDGERMVEVDVPGPFSVNESNTAVAAALDG 240 Query: 241 VGIAYLLEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDIIR 296 VG+AY LE I++E+ G L+ +L +W + APF +YY +RR P LR+L+++IR Sbjct: 241 VGLAYCLEVGIAEELRSGRLQLVLPDWTSMGAPFCLYYPSRRQPQPGLRQLMEMIR 296 >AGpAbx130 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 2/289 (0%) Query: 8 EFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAG 67 + + F+ + SF++AA +L +TPSA SH++K LEERL+ +L R++R++S T AG Sbjct: 12 DLAAFSAFLAVATHRSFRSAADELNMTPSAISHSIKVLEERLNVRLFNRTTRSVSLTEAG 71 Query: 68 SELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKVK 127 LA++L+ I A+ +LE + G +RIN A L++ P + F+R+ P+V Sbjct: 72 ERLASKLKPAMASIEEAVQELEGNGPVPSGTVRINASEGAIRLVLRPVLAPFLREYPQVH 131 Query: 128 LTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLTL 187 L IV D + DIV++G+DAGIR VP+ MV P+ R+ A ASP+Y +R G PL Sbjct: 132 LDIVSDGRLSDIVADGFDAGIRLAEAVPKDMVAIPVMGEVRFAAVASPEYFERRGYPLIP 191 Query: 188 EDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYLL 247 +DL H C++ + Y+WEF R +RI V G +T+++ + AA G+GIA++ Sbjct: 192 QDLHSHDCIRFRFESGAIYRWEFERMGASERINVSGPLTLSDQPLMVEAAIDGIGIAFVP 251 Query: 248 EARISKEIDEGSLEAILEEWGAPSAP-FHMYYSNRRHAHPALRKLIDII 295 + ++ ++ G LE +LE+W P+ P +YYS RRH LR LI+++ Sbjct: 252 DHLATEALEHGRLERVLEDW-CPALPGLCLYYSGRRHVSSGLRALINML 299 >mll1582 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 302 Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 173/296 (58%), Gaps = 3/296 (1%) Query: 8 EFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAG 67 EF++L+ F I+ GSF AA +L ++P A S ++++LE R+ +LL R++R++S TAAG Sbjct: 5 EFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSATAAG 64 Query: 68 SELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKVK 127 L +RL F ++ A+ + ++ + G LRINV AA I P + +F R P + Sbjct: 65 DALFSRLAVAFGELESAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAYPDIA 124 Query: 128 LTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLTL 187 LT++VDD DIV +DAGIR G + + MV L+ + A A+P YL+ P Sbjct: 125 LTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAIPRHP 184 Query: 188 EDLQQHTCLQL-LLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYL 246 ++L QH C++ G + Y+WEF RG+ I + G +T+N+T + A GVGIAY+ Sbjct: 185 QELHQHQCIKFEWPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVGIAYM 244 Query: 247 LEARISKEIDEGSLEAILEEWGAPSAP-FHMYYSNRRHAHPALRKLIDIIRLQHGL 301 E ++ I++G L LE W +PS P F++Y+ + RH PALR ID +R + + Sbjct: 245 FEYQVRPWIEQGRLVRFLEAW-SPSFPGFYLYHPSSRHVPPALRAFIDFMRARRAV 299 >mll2472 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 298 Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 157/292 (53%) Query: 9 FSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAAGS 68 +L I+ F+ AA LGL+PS SH M+ LE R+ +LL R++R+++PT AG Sbjct: 7 LPELTALAAIVSHRGFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVAPTEAGE 66 Query: 69 ELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKVKL 128 L +RL I AL +++ + G LRIN A LL+ +P F+++ P+V L Sbjct: 67 RLVSRLRPLLSDIDAALAEVDDFRGLASGTLRINTSEIGARLLLGSVVPAFLQRYPQVAL 126 Query: 129 TIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLTLE 188 +V + + +DIV+EG+DAGIR G VP+ MV R++A ASP YL P + Sbjct: 127 DLVTEGRLVDIVAEGFDAGIRLGEAVPQDMVAVRFGGPTRFIAVASPAYLAGRTVPRVPD 186 Query: 189 DLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYLLE 248 DL+ C++ L Y+WEF + I VPG +T++N AA G+GIAY+ + Sbjct: 187 DLRDQACIRFRLPSGKPYRWEFEKHGQEIAIDVPGALTLDNMELMAEAAAGGMGIAYISD 246 Query: 249 ARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDIIRLQHG 300 +D G+L +LE+W P +YY R PALR ID+++ G Sbjct: 247 KSAKPYLDRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAFIDVLKETKG 298 >ycaN [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 302 Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 155/290 (53%), Gaps = 3/290 (1%) Query: 7 IEFSDLRVFVTILRTGSFKAAAIQLGLTPSATSHAMKRLEERLSTQLLYRSSRAISPTAA 66 + SD F + R SF+AA +LGL+ SA SH++K LE+RL +L R++R++S T A Sbjct: 3 MNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTEA 62 Query: 67 GSELAARLEEGFEQIALALGQLESSAEGSLGELRINVFADAAHLLIEPAIPEFVRQCPKV 126 GS L RL F++I + L ++ G L+IN AA + + + F R+ P + Sbjct: 63 GSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYPDI 122 Query: 127 KLTIVVDDKPIDIVSEGYDAGIRYGHYVPEGMVTAPLTRAHRWVAAASPDYLDRHGRPLT 186 K+ + DD +DIV +G+DAG+R V + M++ + + AA+P+Y R+G+P Sbjct: 123 KVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKPRH 182 Query: 187 LEDLQQHTCLQLLLGDNSSYQWEFGRGKYRQRIRVPGLVTINNTAATIAAAKAGVGIAYL 246 DL H C+ + W+F + I V G + +++ A + A G GI YL Sbjct: 183 PHDLLNHQCVVFRYPSGKPFHWQFAK---ELEIAVAGNIILDDVDAELEAVLMGAGIGYL 239 Query: 247 LEARISKEIDEGSLEAILEEWGAPSAPFHMYYSNRRHAHPALRKLIDIIR 296 L +I + +D G LE +LE+W F +YY NR++ LR +D ++ Sbjct: 240 LYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYVK 289