BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2741.p (809 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 280 1e-74 CC0896 Non COG 228 4e-59 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 224 5e-58 AGl1027 [T] COG5001 Predicted signal transduction protein contai... 221 6e-57 PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 216 1e-55 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 280 bits (715), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 168/424 (39%), Positives = 250/424 (58%), Gaps = 10/424 (2%) Query: 353 ELKISRLAYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMMDLDRFQQVNDVLGH 412 E +I +LA+ D LTGL NR F + L +A + G +L +DLD F+ VND GH Sbjct: 335 ENRIRQLAHYDTLTGLANRTNFREQLDARLAAPEARLG----LLYIDLDGFKLVNDTKGH 390 Query: 413 SFGDDLLRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGALAQATHILRVLEQPL 472 GD LL +VA RL G +ARLGGDEFA+L+P D D A AT ++ L P Sbjct: 391 RAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATALIEALGAPY 450 Query: 473 SL-QEQTMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKGSGVV-IYDPAIDQSSQ 530 +L +Q + +GA IG+A PAHG+ + LL+RA++A+Y AK G G+ ++ ++ Q Sbjct: 451 ALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFCADMETRIQ 510 Query: 531 ESLSLLSELRRALE-RDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFIPFA 589 L ++LR ALE +D ++ QP +++ TG V EALVRW H E+G+V PD F+P A Sbjct: 511 ARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVPPDEFVPIA 570 Query: 590 ETTGFIRMLTLWMMEKVAGLSAQLQAQGLSLKFSVNLSTRDLLDQELPVAFAAILERHRL 649 E +G I L +++ + + + + + +VN+S L L A L L Sbjct: 571 EQSGLIDQLGRFVLHRACREATRWEDGA---RVAVNVSPMQLGKATLAQTVHAALIDSGL 627 Query: 650 TPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVDELKI 709 PD L +E+TE+A++ + + L +L MG +++DDFGTGYSSLA+L++ P D++KI Sbjct: 628 APDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLRAFPFDKIKI 687 Query: 710 DKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMG 769 D+SFV + + D A +VR+ DLG LG+ VAEGVE++ +R+ GC + QGY+ G Sbjct: 688 DRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGCTEAQGYYYG 747 Query: 770 KPMP 773 +P P Sbjct: 748 RPAP 751 >CC0896 Non COG Length = 677 Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 158/430 (36%), Positives = 231/430 (53%), Gaps = 27/430 (6%) Query: 358 RLAYQDHLTGLPNRVQ-FADLLKEAIAQVQRSGGGSCYILMMDLDRFQQVNDVLGHSFGD 416 RLA D LT LPNR + FA+L +A + R G ++DLD F+ +ND GH+ GD Sbjct: 227 RLANLDSLTDLPNRRRYFAEL--DARVEAARQSGRGFVAGVIDLDDFKPINDAFGHATGD 284 Query: 417 DLLRQVALRLSGQLLHAGAKM--ARLGGDEFAILLPEVDLDGALAQATHILRVLEQPLSL 474 LL +V RL GA + ARLGGDEF +++ D AL LRVL + L Sbjct: 285 RLLIEVGRRLKA---FDGAPILAARLGGDEFGLII-----DAALE--PDALRVLGRELCA 334 Query: 475 QEQ-TMDL-------GAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKGSGV-VIYDPAI 525 Q T DL GA IG +P+ TS +L RA+ A+Y AK+ G G V++D Sbjct: 335 SLQATYDLRGVRAQVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAVVFDERH 394 Query: 526 DQSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNF 585 + + ++ + LR A E ++ QP +++ + I EAL RW PE G + PD F Sbjct: 395 EAAIRDMAVVEQALRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPDVF 454 Query: 586 IPFAETTGFIRMLTLWMMEKVAGLSAQLQAQGLSLKFSVNLSTRDLLDQELPVAFAAILE 645 I AE +G I +T ++ K +++A + ++ S+NLS RD+ E AI+ Sbjct: 455 IGAAERSGQIVEITRLLVAKAL---REMRAWPMDVRVSINLSARDIASMENVRRLLAIVS 511 Query: 646 RHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVD 705 + P + EITE+AI+ D +A++ L +G ++DDFGTG+SSL++L+ LP+D Sbjct: 512 ESCIAPHRIDFEITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRLLPLD 571 Query: 706 ELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQG 765 +LKID SFV + + IVR+ + LG NL + V EGVE+E + +G QG Sbjct: 572 KLKIDASFVSDIEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQG 631 Query: 766 YFMGKPMPVE 775 Y +PMP E Sbjct: 632 YHFARPMPAE 641 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 118/262 (45%), Positives = 156/262 (59%), Gaps = 1/262 (0%) Query: 519 VIYDPAIDQSSQESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKG 578 ++ +++ + + L L+ +LR ALER E +L+ QPK G V+G EALVRW HPE+G Sbjct: 2 CFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERG 61 Query: 579 FVGPDNFIPFAETTGFIRMLTLWMMEKVAGLSAQLQAQGLS-LKFSVNLSTRDLLDQELP 637 V PD FIP AE TG I L W++++ AQ + +G + +VNLS L Sbjct: 62 LVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAALV 121 Query: 638 VAFAAILERHRLTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLA 697 L RH L P L LEITES M D + + L++L AMG +SIDDFGTGYSSL Sbjct: 122 DTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLL 181 Query: 698 YLKSLPVDELKIDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQ 757 YLK LP ELKID+ FV +A D +DA IV + + LG L LR+VAEGVE+E L + Sbjct: 182 YLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTR 241 Query: 758 MGCDQGQGYFMGKPMPVEHFLE 779 +GC QG +G+PM + LE Sbjct: 242 LGCHALQGNLLGRPMTAQAVLE 263 >AGl1027 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 648 Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 151/416 (36%), Positives = 219/416 (52%), Gaps = 8/416 (1%) Query: 359 LAYQDHLTGLPNRVQFADLLKEAIAQVQRSGGGSCYILMMDLDRFQQVNDVLGHSFGDDL 418 LA D LTGLPNR F L+ +A R G + ++DLD F+ VND+ GHS GD L Sbjct: 220 LANIDSLTGLPNRRAFFAHLEVELANA-REKGTRLALGVIDLDGFKPVNDLYGHSVGDRL 278 Query: 419 LRQVALRLSGQLLHAGAKMARLGGDEFAILLPEVDLDGAL-AQATHILRVLEQPLSLQEQ 477 L V+ RL+ L +K RLGGDEFAI+ P + D L A A I L P + E Sbjct: 279 LINVSKRLTANL--KASKAFRLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEG 336 Query: 478 TMDLGAGIGVAGYPAHGQTSGELLSRAEVAMYTAKRKGSG-VVIYDPAIDQSSQESLSLL 536 T+ + A +G+A +P T +L RA+ A+Y AK+ G V++D ++ + Sbjct: 337 TVHVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIE 396 Query: 537 SELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFIPFAETTGFIR 596 L+++ ++E + QP +++ G G EAL RW P G V P F AE G + Sbjct: 397 HLLKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVG 456 Query: 597 MLTLWMMEKVAGLSAQLQAQGLSLKFSVNLSTRDLLDQELPVAFAAILERHRLTPDALCL 656 LT ++ K+A SA SL+ S NLS +DL E ++ I+E L L Sbjct: 457 SLTRPLL-KMALASAS--TWDPSLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRLDL 513 Query: 657 EITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVDELKIDKSFVMK 716 EITE+A D + + +++ L +G +S+DDFGTGYSSL L +LP+ ++KID+SFV Sbjct: 514 EITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVTD 573 Query: 717 MAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPM 772 + + KIV+S + L ++ L V EGVE+ L +G QGY P+ Sbjct: 574 LHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPL 629 >PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 254 Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/250 (45%), Positives = 150/250 (60%), Gaps = 1/250 (0%) Query: 530 QESLSLLSELRRALERDEFMLYLQPKLELGTGAVIGAEALVRWVHPEKGFVGPDNFIPFA 589 QE L LL +LR+ALER + +L+ QPK+ G +IG EAL+RW HP+ G + P F+P A Sbjct: 1 QEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQFLPLA 60 Query: 590 ETTGFIRMLTLWMM-EKVAGLSAQLQAQGLSLKFSVNLSTRDLLDQELPVAFAAILERHR 648 E TG I + W++ E + L +VNLS L + L RH Sbjct: 61 EKTGLIVQIGEWVLDEACRQMRLWLDGGHADWNIAVNLSALQFAHAGLVDSVRNALLRHS 120 Query: 649 LTPDALCLEITESAIMDDPGRAQNTLERLSAMGFALSIDDFGTGYSSLAYLKSLPVDELK 708 L P L LE+TES M D + LE+LSAMG +SIDDFGTGYSSL YLK LP ELK Sbjct: 121 LEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLPASELK 180 Query: 709 IDKSFVMKMAQDQDDAKIVRSTIDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFM 768 ID+ F+ ++A D DDA IV + + LG L L++VAEGVE+E L ++GC+ QG+ + Sbjct: 181 IDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSLQGFLL 240 Query: 769 GKPMPVEHFL 778 G+PMP E L Sbjct: 241 GRPMPAEQLL 250