BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2736.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all1033 [S] COG5606 Uncharacterized conserved small protein Nos ...    66   2e-11
XFa0035 Non COG                                                        56   2e-08
Z3231 [S] COG5606 Uncharacterized conserved small protein EcZ Es...    42   3e-04
ECs2870 [S] COG5606 Uncharacterized conserved small protein Ecs ...    42   3e-04
XF1677 Non COG                                                         42   4e-04

>all1033 [S] COG5606 Uncharacterized conserved small protein Nos Nostoc sp.
           PCC 7120
          Length = 108

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 2   QKRIVEETEVLRSTSNVFADLGLPQADKLRIKTGLVIEIRKAMRALGLTQQAAAQRMGIP 61
           Q+ + EE     S+ NVFADLGL  A +L  +  + I++   ++   L Q+  ++ +GIP
Sbjct: 3   QEPVFEE-----SSGNVFADLGLSNASELFTRGKIGIQVLHLLKQRNLKQREISELLGIP 57

Query: 62  QPKVSGMMRGDFSNLSERKLMDCLNRLGYDIDIRVCPATA 101
           Q +VS +M+G+F   SE KL+  L RL  +I + + P  A
Sbjct: 58  QSEVSHLMKGEFQRFSEGKLLIFLKRLDTEITLHLRPRHA 97


>XFa0035 Non COG
          Length = 49

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 1  MQKRIVEETEVLRSTSNVFADLGLPQADKLRIKTGLV 37
          MQKRI+E  EV RS+ NVFADLGL  A+KL+IKTGLV
Sbjct: 1  MQKRIIEGVEVQRSSGNVFADLGLHDAEKLKIKTGLV 37


>Z3231 [S] COG5606 Uncharacterized conserved small protein EcZ
          Escherichia coli O157:H7 EDL933
          Length = 96

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 26 QADKLRIKTGLVIEIRKAMRALGLTQQAAAQRMGIPQPKVSGMMRGDFSNLSERKLMDCL 85
          QA+ +RI+  LV  I   +   G +Q  AA  +G+ QP++S + RG     S  KL+  +
Sbjct: 19 QAENMRIRAELVTIINNWIEQQGFSQAQAASALGVTQPRISELARGKIQIFSIDKLITMM 78

Query: 86 NRLGYDI 92
             G  I
Sbjct: 79 AHAGLHI 85


>ECs2870 [S] COG5606 Uncharacterized conserved small protein Ecs
          Escherichia coli O157:H7
          Length = 96

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 26 QADKLRIKTGLVIEIRKAMRALGLTQQAAAQRMGIPQPKVSGMMRGDFSNLSERKLMDCL 85
          QA+ +RI+  LV  I   +   G +Q  AA  +G+ QP++S + RG     S  KL+  +
Sbjct: 19 QAENMRIRAELVTIINNWIEQQGFSQAQAASALGVTQPRISELARGKIQIFSIDKLITMM 78

Query: 86 NRLGYDI 92
             G  I
Sbjct: 79 AHAGLHI 85


>XF1677 Non COG
          Length = 93

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 41/73 (56%)

Query: 27 ADKLRIKTGLVIEIRKAMRALGLTQQAAAQRMGIPQPKVSGMMRGDFSNLSERKLMDCLN 86
          A+ +++++ L++ +++ +    L+Q  AA   G+ QP+VS +MRG  +      L++   
Sbjct: 20 AENMKLRSALMMALKQHIETAALSQSQAATLFGVTQPRVSDLMRGKINLFGLDALVNMAA 79

Query: 87 RLGYDIDIRVCPA 99
            G  +++RV  A
Sbjct: 80 AAGMHVEMRVLKA 92