BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2730.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 245 5e-65 mll7060 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 156 3e-38 SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 113 3e-25 VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae 100 2e-21 mll6988 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 98 1e-20 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 245 bits (626), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 120/205 (58%), Positives = 151/205 (73%) Query: 11 LRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRRGAIVA 70 LR+ IE I G+ PG+ LDET LA +FGVSRTPIREAL+QL+++G+VE+RPRRGA+V Sbjct: 9 LRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIRPRRGAVVV 68 Query: 71 EIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPDAYFYLN 130 + PQ++ EMFEVMAE E M G LAARR T + A LLAAH+ C+ A S + D Y+Y N Sbjct: 69 DPAPQRVYEMFEVMAELEGMAGALAARRHTEEDSAALLAAHEKCREAVLSEETDRYYYEN 128 Query: 131 EAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAAVDAIIAGDA 190 E FH IY SH+ FL EQ LHRRLRPYRRLQLRVR+R+K+SF EH V+AI++G+ Sbjct: 129 EIFHRAIYTASHSGFLEEQCTTLHRRLRPYRRLQLRVRNRMKVSFREHGEIVEAILSGNT 188 Query: 191 ERTVEVLRQHIMIQGQRFADLVASL 215 + E LR H+ +QG RF DLVA+L Sbjct: 189 DGAREGLRSHVAVQGDRFGDLVANL 213 >mll7060 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 230 Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 111/190 (58%) Query: 14 SIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIG 73 +I + I G L PG+ LDE SLA +F VSRTP+REAL QL++MG+VE RP RGAIVA + Sbjct: 20 AIGDRIVTGALRPGEKLDEVSLAARFEVSRTPVREALGQLSAMGLVERRPNRGAIVAVVT 79 Query: 74 PQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPDAYFYLNEAF 133 + L MFE MAE E++C R +A RMT +E L HQA + Y Y N F Sbjct: 80 QEHLASMFESMAELESICARFSAERMTSSERRGLEIEHQASGRMVQLGAEEDYEYFNTEF 139 Query: 134 HDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAAVDAIIAGDAERT 193 H +Y G+H++ + E RL P+RR Q R+ RL S+ EH V AI+ GD+ Sbjct: 140 HSRLYRGAHSTHIQELTATTRSRLAPFRRAQFRLPGRLAKSWQEHDLIVTAIMRGDSVAA 199 Query: 194 VEVLRQHIMI 203 + R H+ I Sbjct: 200 GKAARDHVSI 209 >SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 228 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/204 (36%), Positives = 104/204 (50%) Query: 9 ETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRRGAI 68 +TL + +MI G L PG L E L EQ GVSRTP+REA+ LAS G+VE+ P RGA+ Sbjct: 25 DTLVSHLRDMIIEGDLPPGTRLHEGQLGEQLGVSRTPLREAIKYLASEGLVELVPSRGAV 84 Query: 69 VAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPDAYFY 128 V + + +M V+ E + GRLA T AE AE+ A H ++ D Y+ Sbjct: 85 VKRFSAKDVRDMLTVLQTLEELAGRLACETATDAEIAEVRALHDEMVRRYEAGDRMQYYK 144 Query: 129 LNEAFHDHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAAVDAIIAG 188 LN+ H I S N+ LA+ L RL+ R + ++ + EHQ + A+ A Sbjct: 145 LNQDIHSAIARLSGNAALADMHAMLQTRLKRIRFIGHEGPEKWAAAVAEHQEMIAALEAR 204 Query: 189 DAERTVEVLRQHIMIQGQRFADLV 212 D R EVL H+ +R D V Sbjct: 205 DKARLSEVLGLHLTRAWERVRDAV 228 >VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae Length = 235 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 3/199 (1%) Query: 6 TRSETLRESIEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRR 65 T+SE L E + E I G+LAPG + E LA+QF VSR P+REAL+++ +G++E P Sbjct: 18 TKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLREALMRVEGLGLIERIPHI 77 Query: 66 GAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPDA 125 GA V ++ P +L+E++ V E M RLAAR +T E A L + D + + Sbjct: 78 GARVIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLESLLSTHSTHIDQVEGAS 137 Query: 126 YFYLNEAFHDH---IYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAAV 182 YF+ F H I A + + L+ LR YR R R + +EH+ + Sbjct: 138 YFHQQGDFDFHYRIIQACRNQQLIGLLCDELYHLLRMYRYQSPRSHSRPVEALEEHKFIL 197 Query: 183 DAIIAGDAERTVEVLRQHI 201 AI D E ++R+HI Sbjct: 198 RAIRQRDEELAEMLMRRHI 216 >mll6988 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 220 Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 1/199 (0%) Query: 15 IEEMIAVGKLAPGQHLDETSLAEQFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIGP 74 ++ + +G+ PG L +A + G+SR P+REA +LAS G+V +RP RG +VA + Sbjct: 20 VQRALRLGRYKPGDRLIPEEIAAEIGMSRMPVREAFRRLASDGLVVLRPNRGCVVAGLTV 79 Query: 75 QQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDSSDPDAYFYLNEAFH 134 +L E+FE+ + E + RLA R+ E EL + + A S D + ++ FH Sbjct: 80 DELFEIFEIRSVLEGLAVRLAVPRIDDEEFEELDRLLERMERAGQSGGGD-WVVRHQEFH 138 Query: 135 DHIYAGSHNSFLAEQARALHRRLRPYRRLQLRVRDRLKMSFDEHQAAVDAIIAGDAERTV 194 I A S L Q ALH + PY R+ ++ + +EH A + A+ +GDA Sbjct: 139 GRICALSQRPKLIHQISALHVVIEPYMRIWFDDCNKPLSAREEHAAVIAALRSGDAHHAE 198 Query: 195 EVLRQHIMIQGQRFADLVA 213 +V+++H++ A+ V+ Sbjct: 199 QVMQEHVLGTAPLLAEFVS 217