BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2725.p         (104 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0210 Non COG                                                         69   3e-12
VNG1606G [E] COG0404 Glycine cleavage system T protein (aminomet...    33   0.23 
L163602 [O] COG1219 ATP-dependent protease Clp, ATPase subunit L...    28   3.4  
PA1997 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ...    28   4.0  
BS_clpX [O] COG1219 ATP-dependent protease Clp, ATPase subunit B...    28   4.2  

>PA0210 Non COG
          Length = 99

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 1  METLTFRFEHGSRRLKAAPELVGVVSSGNLEVLIENAALNGACAIEVKTAARGFGTIWEA 60
          METLTF F  G+     A  L G V SG+LEVL+E AA  GA +I+V T+  G G  W+ 
Sbjct: 1  METLTFEFPAGAPARGRA--LAGCVGSGDLEVLLEPAA-GGALSIQVVTSVNGSGPRWQQ 57

Query: 61 VMTDFQQRWQLADTRISINDMGATPAVVSLRLDQAVE 97
          +              I I+D GATP VV LRL+QA+E
Sbjct: 58 LFARVFAASTAPAASIRIHDFGATPGVVRLRLEQALE 94


>VNG1606G [E] COG0404 Glycine cleavage system T protein
           (aminomethyltransferase) Hbs Halobacterium sp. NRC-1
          Length = 387

 Score = 32.7 bits (73), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 10  HGSRRLKAAPELVGVVSSGNLEVLIENAALNGACAIEVKTAARGFGTIWEAVMTDFQ 66
           H   R +AA   VGV     +E L+ N    G   +E+   A G G +W+A+  D Q
Sbjct: 195 HDLGRFEAA--TVGVA---GVECLVANTGYTGEAGVEIVFPADGAGAVWDAIANDCQ 246


>L163602 [O] COG1219 ATP-dependent protease Clp, ATPase subunit Lla
           Lactococcus lactis
          Length = 411

 Score = 28.5 bits (62), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 29  NLEVLIENAALNGAC--AIEVKTAARGFGTIWEAVMTD--FQQRWQLADTRISIND 80
           N+E+  E+ AL      AIE KT ARG  +I E VM D  F+       T++ IN+
Sbjct: 338 NVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINE 393


>PA1997 [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
           Pae Pseudomonas aeruginosa
          Length = 651

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 3   TLTFRFEHGSRRLKAAPELVGVVSSGNLEVLIENAALNGACAIEVKTAARGFGTIWEAVM 62
           TL F  EH  RR   AP L+ V   G  EVL           ++ + AA G G   + V 
Sbjct: 86  TLNFA-EHLLRRRDDAPALIAVSEDGRREVLSHAELARHVAGLQKRLAALGIGPG-DRVA 143

Query: 63  TDFQQRWQLADTRISINDMGAT 84
                 WQ     ++   +GAT
Sbjct: 144 ALMPNTWQTVVGMLATASLGAT 165


>BS_clpX [O] COG1219 ATP-dependent protease Clp, ATPase subunit Bsu Bacillus
           subtilis
          Length = 420

 Score = 28.5 bits (62), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 29  NLEVLIENAALN--GACAIEVKTAARGFGTIWEAVMTD 64
           N+E+  E  AL+     AIE KT ARG  +I E +M D
Sbjct: 339 NVELEFEEEALSEIAKKAIERKTGARGLRSIIEGIMLD 376