BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2714.p (289 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3022 [R] COG3217 Uncharacterized Fe-S protein Pae Pseudomonas ... 167 2e-41 VCA0924_1 [R] COG3217 Uncharacterized Fe-S protein Vch Vibrio ch... 152 9e-37 YPO1417_1 [R] COG3217 Uncharacterized Fe-S protein Ype Yersinia ... 148 1e-35 ECs1031_1 [R] COG3217 Uncharacterized Fe-S protein Ecs Escherich... 141 2e-33 Z1297_1 [R] COG3217 Uncharacterized Fe-S protein EcZ Escherichia... 141 2e-33 >PA3022 [R] COG3217 Uncharacterized Fe-S protein Pae Pseudomonas aeruginosa Length = 268 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/278 (41%), Positives = 151/278 (54%), Gaps = 18/278 (6%) Query: 9 LSAIYFYPIKSCGGLSLARAEIGPLGLALDRHWMVVDRQ-GQFLSQRSHPRMACITPAFE 67 LSA+Y YPIKS SL R + LG+ DR WM VD + G+F +QR P++ I + Sbjct: 4 LSALYRYPIKSSAAESLERVALDALGVVGDRRWMAVDTETGRFFTQRLLPQLGRIQARWA 63 Query: 68 E-DALVLRAPGMEALRLAAAGQDGATLAVQVWNSPLEALDQGEQARIWLSDYLHDAVRLV 126 + L L APGM L L D V VW L+A D G+ A WL+ +L RLV Sbjct: 64 APEVLRLNAPGMSELSLEVPAADANLRGVTVWRDTLQAPDAGDAAADWLTRFLGRPTRLV 123 Query: 127 RFNPAIMRACSTRWTGDYRASTQFSDGYPLLVIGQSSLDDLNARLAAKGAPAQGMERFRP 186 A R T + + F+DG+PLL+IGQ+SLDDL+ R+ G P + M RFRP Sbjct: 124 HIPEARARQVDTGY-AEPGQKVHFADGFPLLLIGQASLDDLSQRV---GRPLE-MLRFRP 178 Query: 187 NLVISGLEAYEEDYIDTVRIGAGGRAVQLKLVKPCARCPIPGIDQRTGLRDAQWPDEPLA 246 NLV+ G A+ ED +RIG +V+ + KPC+RC + +D TG R+ EPL Sbjct: 179 NLVVEGSAAFAEDGWKRIRIG----SVEFVVAKPCSRCILTTLDPATGERNED--REPLT 232 Query: 247 TLSTYRANPRVDGGLTFGQNAIVIGGEGGVIEVGQACE 284 TL TYR DG + FGQN I +G G +EVG E Sbjct: 233 TLKTYREK---DGAVLFGQNLIALG--QGSLEVGMPVE 265 >VCA0924_1 [R] COG3217 Uncharacterized Fe-S protein Vch Vibrio cholerae Length = 337 Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 142/284 (50%), Gaps = 21/284 (7%) Query: 2 SSTSTSTLSAIYFYPIKSCGGLSLARAEIGPLGLALDRHWMVVDRQGQFLSQRSHPRMAC 61 S+ S+ LS I +P+KS GGL+L+ A + GL DR +M+ G ++ R P+M Sbjct: 56 STMSSGLLSQINVFPVKSLGGLALSSAWVEKQGLTFDRRFMLALSDGSMVTARKFPQMVL 115 Query: 62 ITPAFEEDALVLRAPGMEALRLAAAGQDGATLAVQVWNSPLEALDQGEQARIWLSDYLHD 121 I A D ++ A G +L + A + QVW+ A ++A W S L Sbjct: 116 IKTALRHDGVLFSAQGHPSLTIRYADFKFQPVPAQVWSDNFTAYTTTDEADDWFSQVLGI 175 Query: 122 AVRLVRFNPAIMRACSTRWTGDYRASTQFSDGYPLLVIGQSSLDDLNARLAAKGAPAQGM 181 V L+ S R + F+DGYPLLVI Q+SLD+LN R M Sbjct: 176 RVELLYSGEQ-----SNRVREKVGHNVSFADGYPLLVISQASLDELNRR----SPEFHSM 226 Query: 182 ERFRPNLVISGLEAYEEDYIDTVRIGAGGRAVQLKLVKPCARCPIPGIDQRTG-LRDAQW 240 ++FR NLV+SG E + ED +RIG V+ + VKPC RC + ++ + G R + Sbjct: 227 DQFRTNLVVSGTEPFAEDSWKRIRIG----EVEFEAVKPCERCILTTVEVKKGAFRPTK- 281 Query: 241 PDEPLATLSTYRANPRVDGGLTFGQNAIVIGGEGGVIEVGQACE 284 EPL TLS +RAN R GG+ FGQN ++ G+I G E Sbjct: 282 --EPLRTLSQFRANER--GGVFFGQN--LVAKNEGMIRAGDPIE 319 >YPO1417_1 [R] COG3217 Uncharacterized Fe-S protein Ype Yersinia pestis Length = 273 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 136/286 (47%), Gaps = 36/286 (12%) Query: 8 TLSAIYFYPIKSCGGLSLARAEIGPLGLALDRHWMVVDRQGQFLSQRSHPRMACITPAFE 67 TLS +Y +P+KS GL L+ A++ GLA DR +M+ + G F++ R +P+M TPA Sbjct: 4 TLSRLYVHPVKSMRGLQLSHAQVSRSGLAFDRVFMITEPDGMFITARQYPKMVMFTPALM 63 Query: 68 EDALVLRAPGMEALRLAAAGQDGATLAVQVWNSPLEALDQGEQARIWLSDYLHDAVRLVR 127 D L L AP E+ + +VW + AL E WLS Y V+L Sbjct: 64 ADGLYLTAPDGESASIRFNDFLANPAPTEVWGNHFTALIAPEAINSWLSGYFQRDVQL-- 121 Query: 128 FNPAIMRACSTRWTGDY---------RASTQFSDGYPLLVIGQSSLDDLNARLAAKGAPA 178 RW G F+DG+P L+I ++S DL R A + Sbjct: 122 -----------RWVGTELTRRVKPLPEVPLSFADGFPYLLINEASFKDLQQRCPA----S 166 Query: 179 QGMERFRPNLVISGLEAYEEDYIDTVRIGAGGRAVQLKLVKPCARCPIPGIDQRTGLRDA 238 +E+FRPNLVI+G A+ ED +RIG + LVKPC+RC + + G + Sbjct: 167 IKLEQFRPNLVITGTTAFAEDCWQVIRIG----DITFDLVKPCSRCVLTTVSVERGQKHP 222 Query: 239 QWPDEPLATLSTYRANPRVDGGLTFGQNAIVIGGEGGVIEVGQACE 284 EPL TL T+R +G + FGQN ++ G+I VG E Sbjct: 223 A--GEPLRTLQTFRTAE--NGDVDFGQN--MVARNSGIIRVGDEVE 262 >ECs1031_1 [R] COG3217 Uncharacterized Fe-S protein Ecs Escherichia coli O157:H7 Length = 267 Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 139/281 (49%), Gaps = 23/281 (8%) Query: 7 STLSAIYFYPIKSCGGLSLARAEIGPLGLALDRHWMVVDRQGQFLSQRSHPRMACITPAF 66 +TL+ ++ +P+KS G+ L A GLA DR +M+ + G F++ R P+M TP+ Sbjct: 2 ATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSP 61 Query: 67 EEDALVLRAPGMEA--LRLA-AAGQDGATLAVQVWNSPLEALDQGEQARIWLSDYLHDAV 123 D L L AP + +R A A QD T +VW + A E WLS + V Sbjct: 62 VHDGLHLTAPDSSSAYVRFADFATQDAPT---EVWGTHFTARIAPEAINKWLSGFFSREV 118 Query: 124 RLVRFNPAIMRACSTRWTGDYRASTQFSDGYPLLVIGQSSLDDLNARLAAKGAPAQGMER 183 +L P + R T F+DGYP L+ ++SL DL R A + ME+ Sbjct: 119 QLRWVGPQMTRRVKRHNT----VPLSFADGYPYLLANEASLRDLQQRCPA----SVKMEQ 170 Query: 184 FRPNLVISGLEAYEEDYIDTVRIGAGGRAVQLKLVKPCARCPIPGIDQRTGLRDAQWPDE 243 FRPNLV+SG A+EED +RIG V +VKPC+RC + G + E Sbjct: 171 FRPNLVVSGASAWEEDSWKVIRIG----DVVFDVVKPCSRCIFTTVSPEKGQKHPA--GE 224 Query: 244 PLATLSTYRANPRVDGGLTFGQNAIVIGGEGGVIEVGQACE 284 PL TL ++R + +G + FGQN +I GVI VG E Sbjct: 225 PLKTLQSFR-TAQDNGDVDFGQN--LIARNSGVIRVGDEVE 262 >Z1297_1 [R] COG3217 Uncharacterized Fe-S protein EcZ Escherichia coli O157:H7 EDL933 Length = 273 Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 139/281 (49%), Gaps = 23/281 (8%) Query: 7 STLSAIYFYPIKSCGGLSLARAEIGPLGLALDRHWMVVDRQGQFLSQRSHPRMACITPAF 66 +TL+ ++ +P+KS G+ L A GLA DR +M+ + G F++ R P+M TP+ Sbjct: 2 ATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQMVRFTPSP 61 Query: 67 EEDALVLRAPGMEA--LRLA-AAGQDGATLAVQVWNSPLEALDQGEQARIWLSDYLHDAV 123 D L L AP + +R A A QD T +VW + A E WLS + V Sbjct: 62 VHDGLHLTAPDSSSAYVRFADFATQDAPT---EVWGTHFTARIAPEAINKWLSGFFSREV 118 Query: 124 RLVRFNPAIMRACSTRWTGDYRASTQFSDGYPLLVIGQSSLDDLNARLAAKGAPAQGMER 183 +L P + R T F+DGYP L+ ++SL DL R A + ME+ Sbjct: 119 QLRWVGPQMTRRVKRHNT----VPLSFADGYPYLLANEASLRDLQQRCPA----SVKMEQ 170 Query: 184 FRPNLVISGLEAYEEDYIDTVRIGAGGRAVQLKLVKPCARCPIPGIDQRTGLRDAQWPDE 243 FRPNLV+SG A+EED +RIG V +VKPC+RC + G + E Sbjct: 171 FRPNLVVSGASAWEEDSWKVIRIG----DVVFDVVKPCSRCIFTTVSPEKGQKHPA--GE 224 Query: 244 PLATLSTYRANPRVDGGLTFGQNAIVIGGEGGVIEVGQACE 284 PL TL ++R + +G + FGQN +I GVI VG E Sbjct: 225 PLKTLQSFR-TAQDNGDVDFGQN--LIARNSGVIRVGDEVE 262