BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2679.p (1140 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20609_1 Non COG 684 0.0 AGc4388_1 Non COG 671 0.0 MT3561 Non COG 406 e-112 Rv3454 Non COG 304 7e-82 AGc4388_2 [T] COG0642 Signal transduction histidine kinase Atu A... 275 5e-73 >SMb20609_1 Non COG Length = 675 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/690 (51%), Positives = 473/690 (68%), Gaps = 27/690 (3%) Query: 5 ATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEAISGA 64 A QRI+ VRR+YN WVAN+TLEDYALR+T S RR+S R++ TA+GA SFLALEAI GA Sbjct: 3 ARQRIIPVRREYNRWVANQTLEDYALRFTAKSARRFSSARISQTAIGAISFLALEAIGGA 62 Query: 65 ITLSYGFTNAFWAIVCVVVLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIY 124 IT+SYG TNA AI+ ++ + GLPIS YA R+GVD+DLLTRGA FGYIGSTITSLIY Sbjct: 63 ITMSYGTTNAIVAILVASLMILIVGLPISRYAIRHGVDIDLLTRGASFGYIGSTITSLIY 122 Query: 125 ASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLW 184 ASFTFI FA+EA+IM+ A+E+ G+PL GY++ ++++IP+V +G+ LI+R Q+ TQP W Sbjct: 123 ASFTFILFAIEASIMSGALELALGIPLWIGYIVSAVMVIPLVTHGVKLISRFQLVTQPFW 182 Query: 185 LVLLVLPYVCVLYKEPEALSNLLSFAGRAEEG------SSFNLTLFGAAATVAFSLIAQV 238 +VL VLP+ + + + E + L++AG +SF+L FGAA+ V F+L AQ+ Sbjct: 183 IVLNVLPFAFIAFADWEKVGLWLAYAGIHHTSGPPGTLASFHLVEFGAASAVIFALTAQI 242 Query: 239 GEQVDFLRFLPQKTSANRGRWWGALLLAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARA 298 GEQVDFLRFLP + R A+ LAG GW+++G K+L G+ L LA+ VP RA Sbjct: 243 GEQVDFLRFLPPD-GERKLRHRIAVFLAGSGWVIVGAPKLLAGSFLVVLALSTGVPSTRA 301 Query: 299 VEPTQMYLIGYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHP 358 +P QMY + Y+F + AL + FVVVSQ+KINV NAYAGSLAWSNFF+RLTHSHP Sbjct: 302 ADPAQMYYTAFGYIFPSDTAALLLMAAFVVVSQLKINVMNAYAGSLAWSNFFSRLTHSHP 361 Query: 359 GRVVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHI 418 GRV+WLVFNV IA+LLMELG++ LE L ++S+VA++W+ + ADL +NKPL L+P I Sbjct: 362 GRVIWLVFNVAIALLLMELGIYRLLEETLGIFSIVAMAWLSTISADLFVNKPLGLAPPGI 421 Query: 419 EFKRAHLYDVNPVGVGSMTIATLLSTLAMSGVLGKTVAAMAPFIALGTALVSAPLIAVAT 478 EFKRAHLYD+NPVG+G+M ++TL + +A G G+ A++AP+IAL TA V +PLIA T Sbjct: 422 EFKRAHLYDINPVGLGTMGVSTLFALVAHFGAAGEIAASLAPYIALVTAFVVSPLIAWWT 481 Query: 479 GSRYYIARRDTLSEQSYRPYTPGQAHSVLDCVICGNAFETPDMAHCPAYQGAICSLCCSL 538 ++Y+AR +P A S + C IC + FE DMA CPAY ICSLCCSL Sbjct: 482 EGKFYLAR---------KPRKSWLAESEITCSICEHPFEPEDMAWCPAYAAPICSLCCSL 532 Query: 539 DARCKDRCKTPRARLPNQILHTLRQLIPARFTLKLNTRIGHYLAVFGLLAGGLAIVLWML 598 D+RC D CK P+ARL Q+ + ++P KL TR+G Y + G+ ++L M+ Sbjct: 533 DSRCHDMCK-PKARLNTQVATVAKAVLPETVVAKLATRLGRYAISAVISITGIGVILAMI 591 Query: 599 YFQQMADLSGLTLSAPDSLRGV---FIKLFCLLLVVVGVGAWWLVLTNESRAVAQEESER 655 Q T ++P++ V +F + ++ GV +W+ VL ++SR VA+EES R Sbjct: 592 AHQT-------TAASPETAEVVERTIAIVFFVFAILAGVVSWFYVLAHDSRVVAEEESSR 644 Query: 656 QTNLLLQEIEAHKQTDAELQRAKEAAESAN 685 Q LL+EI AHK+TDA LQ AKE AESAN Sbjct: 645 QNTALLKEIAAHKKTDAALQDAKERAESAN 674 >AGc4388_1 Non COG Length = 675 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/687 (49%), Positives = 468/687 (68%), Gaps = 21/687 (3%) Query: 5 ATQRIVKVRRDYNTWVANETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEAISGA 64 A QRI+ VRR+YN WVAN+TLEDYALR+T S R++S R+++TA+GA SFLALEAI GA Sbjct: 3 ARQRIIPVRREYNRWVANQTLEDYALRFTAKSARQFSSNRISHTAIGAISFLALEAIGGA 62 Query: 65 ITLSYGFTNAFWAIVCVVVLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIY 124 ITLSYG TNAF+AI+ + GLPIS YA R+GVD+DLLTRGA FGYIGSTITSLIY Sbjct: 63 ITLSYGTTNAFYAIIVAAIAMLAVGLPISRYAIRHGVDIDLLTRGASFGYIGSTITSLIY 122 Query: 125 ASFTFIFFALEAAIMAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLW 184 A+FTF+ FA+EA+IM+ A+E+ G+PL GY++ ++++IP+V +G+ LI+R Q+ TQP W Sbjct: 123 AAFTFMLFAIEASIMSGALELALGIPLWIGYIISAVMVIPLVTHGVRLISRFQIITQPFW 182 Query: 185 LVLLVLPYVCVLYKEPE------ALSNLLSFAGRAEEGSSFNLTLFGAAATVAFSLIAQV 238 +VL +LP++ + + E A S + +G + FNL FGAA+ V +L++Q+ Sbjct: 183 IVLNILPFIFIALMDWEKYDLWRAFSGIHHASGPPGTVADFNLVEFGAASAVILALMSQI 242 Query: 239 GEQVDFLRFLPQKTSANRGRWWGALLLAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARA 298 GEQVDFLRFLP + +R R A+ LAG GW+++G K+L G+ L L V + RA Sbjct: 243 GEQVDFLRFLPAE-GQSRVRHRIAVFLAGAGWVVVGVPKLLAGSFLVVLTFSSGVSVDRA 301 Query: 299 VEPTQMYLIGYQYVFGNPALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHP 358 +P QMYL + Y+ N A+ +V FVVVSQ+KINV NAYAGSLAWSNFF+RLTHSHP Sbjct: 302 ADPAQMYLTAFGYMVPNETAAMLLMVAFVVVSQLKINVMNAYAGSLAWSNFFSRLTHSHP 361 Query: 359 GRVVWLVFNVLIAVLLMELGVFNALEHVLALYSLVAISWIGAVVADLVINKPLRLSPAHI 418 GRVVWLVFNV IA+LLMELG++ LE L ++S++A++W+ + ADL INKPL L+P I Sbjct: 362 GRVVWLVFNVAIALLLMELGIYRLLEETLGIFSIIAMAWLCTISADLFINKPLGLAPPGI 421 Query: 419 EFKRAHLYDVNPVGVGSMTIATLLSTLAMSGVLGKTVAAMAPFIALGTALVSAPLIAVAT 478 EFKRAHLYD+NPVGVGSM ++ ++ +A G G A++AP++ L A +++P +A+AT Sbjct: 422 EFKRAHLYDINPVGVGSMALSATIALMAHFGTFGPLAASLAPYLTLIVAFIASPALALAT 481 Query: 479 GSRYYIARRDTLSEQSYRPYTPGQAHSVLDCVICGNAFETPDMAHCPAYQGAICSLCCSL 538 ++Y+AR +P S + C IC + FE DMA CPAY ICSLCCSL Sbjct: 482 KGKFYLAR---------KPRQKWHEESSITCSICEHPFEPEDMAWCPAYAAPICSLCCSL 532 Query: 539 DARCKDRCKTPRARLPNQILHTLRQLIPARFTLKLNTRIGHYLAVFGLLAGGLAIVLWML 598 D+RC D CK P+A+L Q+ + +P + KL TR+G Y + + +L ++ Sbjct: 533 DSRCHDMCK-PKAKLNYQVASVAKTFLPRQLVAKLATRLGRYGMAAAIAVTAIGGILALI 591 Query: 599 YFQQMADLSGLTLSAPDSLRGVFIKLFCLLLVVVGVGAWWLVLTNESRAVAQEESERQTN 658 Q + + + D + + +F + V+ G+ W+LVL ++SR VA+EES RQ Sbjct: 592 AHQ----VGTASPATADVVNRTILIVFFVFAVIAGIVCWFLVLAHDSRVVAEEESSRQNT 647 Query: 659 LLLQEIEAHKQTDAELQRAKEAAESAN 685 LLL+EI AHK+TDA LQ AKE AE+AN Sbjct: 648 LLLKEIAAHKKTDAALQDAKETAEAAN 674 >MT3561 Non COG Length = 562 Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust. Identities = 233/543 (42%), Positives = 336/543 (61%), Gaps = 16/543 (2%) Query: 23 ETLEDYALRYTPLSFRRWSEFRLANTALGATSFLALEAISGAITLSYGFTNAFWAIVCVV 82 ETLEDY LR P S+RRW + +ALG ++LA AI + +++G NA I Sbjct: 25 ETLEDYTLRLAPRSYRRWPPAVVGISALGGIAYLADFAIGANVGITWGTANALCGIAIFA 84 Query: 83 VLFFLTGLPISYYAARYGVDMDLLTRGAGFGYIGSTITSLIYASFTFIFFALEAAIMAQA 142 ++ F+TGLP++YYAARY +D+DL+TRG+GFGY GS +T++I+A+FTFIFFALE +IMAQ Sbjct: 85 LVVFVTGLPLAYYAARYNIDLDLITRGSGFGYYGSVVTNVIFATFTFIFFALEGSIMAQG 144 Query: 143 IEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLWLVLLVLPYVCVLYKEPEA 202 +++ +PL GY +LII P+V YG+ ++++LQ+WT PLWL+L+ P+ ++ P++ Sbjct: 145 LKLGLHIPLWAGYACSTLIIFPLVVYGMKVLSQLQLWTTPLWLILMAAPFGYLVVSHPDS 204 Query: 203 LSNLLSFAGRAEEGS-SFNLTLFGAAATVAFSLIAQVGEQVDFLRFLPQKTSANRGRWWG 261 + S+AG+ G SF L AA V SLIAQ+ EQ+D+LRF+P +T N RWW Sbjct: 205 IGQFFSYAGKDGHGGLSFGSVLL--AAGVCLSLIAQIAEQIDYLRFMPPRTPENANRWWT 262 Query: 262 ALLLAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARAV--EPTQMYLIGYQYVFGNPALA 319 LLAGPGW+ G K + G LA + + +P + + +P ++ Y+ F LA Sbjct: 263 WTLLAGPGWVAFGATKQIIGLFLA-VYLMANIPGSSTIANQPVHQFMQIYR-TFVPGWLA 320 Query: 320 LGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNVLIAVLLMELGV 379 L V+ VV+SQIKINVTNAY+GSLAW+N F RLT +PGRVV+L N+ IA++LME + Sbjct: 321 LTLAVILVVLSQIKINVTNAYSGSLAWTNSFTRLTKHYPGRVVFLGVNLAIALILMEANM 380 Query: 380 FNALEHVLALYSLVAISWIGAVVADLVINKP-LRLSPAHIEFKRAHLYDVNPVGVGSMTI 438 F+ L +L Y+ ++W+ AV +D+ NK L LSP EF+R LY +NPVG GS+ + Sbjct: 381 FDFLNTILGCYANCGMAWVVAVASDIGFNKYLLGLSPKTPEFRRGMLYAINPVGFGSLLL 440 Query: 439 ATLLSTLAMSGVLGKTVAAMAPFIALGTALVSAPLIAVATGSRYYIAR-RDTLSEQSYRP 497 A LS + G LG + +P +A+ TALV P++A AT +YY+ R D + Y Sbjct: 441 AAGLSIVTFFGGLGAALQPYSPLVAIVTALVMPPILAAATKGKYYLRRTHDGIDLPMYDE 500 Query: 498 YTPGQAHSVLDCVICGNAFETPDMAHCPAYQGAICSLCCSLDARCKD------RCKTPRA 551 + A +VL C +C FE PDM C + +CSLC S D + + R P Sbjct: 501 HGNPSA-AVLTCHVCHQDFERPDMLACQTHGAHVCSLCLSTDKQAEHVLPGLARAHIPGD 559 Query: 552 RLP 554 ++P Sbjct: 560 QVP 562 >Rv3454 Non COG Length = 422 Score = 304 bits (779), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 173/427 (40%), Positives = 252/427 (59%), Gaps = 16/427 (3%) Query: 139 MAQAIEIYFGLPLVYGYVLCSLIIIPMVAYGITLINRLQMWTQPLWLVLLVLPYVCVLYK 198 MAQ +++ +PL GY +LII P+V YG+ ++++LQ+WT PLWL+L+ P+ ++ Sbjct: 1 MAQGLKLGLHIPLWAGYACSTLIIFPLVVYGMKVLSQLQLWTTPLWLILMAAPFGYLVVS 60 Query: 199 EPEALSNLLSFAGRAEEGS-SFNLTLFGAAATVAFSLIAQVGEQVDFLRFLPQKTSANRG 257 P+++ S+AG+ G SF L AA V SLIAQ+ EQ+D+LRF+P +T N Sbjct: 61 HPDSIGQFFSYAGKDGHGGLSFGSVLL--AAGVCLSLIAQIAEQIDYLRFMPPRTPENAN 118 Query: 258 RWWGALLLAGPGWILLGGAKMLGGTLLAFLAIQHEVPMARAV--EPTQMYLIGYQYVFGN 315 RWW LLAGPGW+ G K + G LA + + +P + + +P ++ Y+ F Sbjct: 119 RWWTWTLLAGPGWVAFGATKQIIGLFLA-VYLMANIPGSSTIANQPVHQFMQIYR-TFVP 176 Query: 316 PALALGAVVLFVVVSQIKINVTNAYAGSLAWSNFFARLTHSHPGRVVWLVFNVLIAVLLM 375 LAL V+ VV+SQIKINVTNAY+GSLAW+N F RLT +PGRVV+L N+ IA++LM Sbjct: 177 GWLALTLAVILVVLSQIKINVTNAYSGSLAWTNSFTRLTKHYPGRVVFLGVNLAIALILM 236 Query: 376 ELGVFNALEHVLALYSLVAISWIGAVVADLVINKP-LRLSPAHIEFKRAHLYDVNPVGVG 434 E +F+ L +L Y+ ++W+ AV +D+ NK L LSP EF+R LY +NPVG G Sbjct: 237 EANMFDFLNTILGCYANCGMAWVVAVASDIGFNKYLLGLSPKTPEFRRGMLYAINPVGFG 296 Query: 435 SMTIATLLSTLAMSGVLGKTVAAMAPFIALGTALVSAPLIAVATGSRYYIAR-RDTLSEQ 493 S+ +A LS + G LG + +P +A+ TALV P++A AT +YY+ R D + Sbjct: 297 SLLLAAGLSIVTFFGGLGAALQPYSPLVAIVTALVMPPILAAATKGKYYLRRTHDGIDLP 356 Query: 494 SYRPYTPGQAHSVLDCVICGNAFETPDMAHCPAYQGAICSLCCSLDARCKD------RCK 547 Y + A +VL C +C FE PDM C + +CSLC S D + + R Sbjct: 357 MYDEHGNPSA-AVLTCHVCHQDFERPDMLACQTHGAHVCSLCLSTDKQAEHVLPGLARAH 415 Query: 548 TPRARLP 554 P ++P Sbjct: 416 IPGDQVP 422 >AGc4388_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 246 Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 133/244 (54%), Positives = 175/244 (71%) Query: 687 AKSRFVAGMSHELRTPLNSILGYAQILHVDATIPPARKEAIAIIRRSGEHLLSLIDGLLD 746 AKSR+V G+SHELRTPLN++LGYAQIL D TIP R+ AI +IRRS +HL LIDGLLD Sbjct: 1 AKSRYVVGLSHELRTPLNAVLGYAQILERDETIPAPRQSAIKVIRRSADHLSGLIDGLLD 60 Query: 747 IAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKGLQFRFEKTGRLPQIVHADQKRLR 806 I+KIEAG++++ S+E+ ++ FL+Q+V MF PQA+ KGL+FR E+T LPQ V D+KRLR Sbjct: 61 ISKIEAGRLQVYSNEINIKDFLDQVVDMFRPQAQAKGLEFRHERTAALPQYVRTDEKRLR 120 Query: 807 QILINLLGNAVKFTDRGGVTLKLRYAREIAYFDVIDTGIGIAEDDLERIFLPFERSSAAN 866 QIL+NLL NA+KFTD G VT + Y ++A F V DTG GIAE DL RI+ PF+R A + Sbjct: 121 QILVNLLSNAIKFTDEGSVTFDVAYRSQVASFTVSDTGRGIAEKDLARIYEPFQRGEAES 180 Query: 867 LREDIGTGLGLAISRMLVHIMGGELGVQSQVGQGSSFHLKIYLPEVHVPRPRIPLEDQMS 926 +R G GLGL I+R+L + +GGE+ V S+ GS+F +++ L VH P E + Sbjct: 181 VRPMPGLGLGLTITRLLTNTLGGEISVSSEKDNGSTFRVRLMLSAVHRPSTAPAPEKTIR 240 Query: 927 GYLG 930 Y G Sbjct: 241 SYSG 244