BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2678.p (418 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value slr0447 [E] COG0683 ABC-type branched-chain amino acid transport... 372 e-103 all1951 [E] COG0683 ABC-type branched-chain amino acid transport... 359 5e-99 DRA0320 [E] COG0683 ABC-type branched-chain amino acid transport... 348 1e-95 BH0251 [E] COG0683 ABC-type branched-chain amino acid transport ... 340 3e-93 Cgl0906 [E] COG0683 ABC-type branched-chain amino acid transport... 326 6e-89 >slr0447 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Syn Synechocystis Length = 446 Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust. Identities = 208/422 (49%), Positives = 273/422 (64%), Gaps = 20/422 (4%) Query: 7 SNPPSFPRRKILM----GLAAGAAAAALPGMASAQQYPTAKVN---TTKLAITDTEVTVG 59 +NP F RRK L+ L A A G PTA+ TT A T + VG Sbjct: 2 TNP--FGRRKFLLYGSATLGASLLLKACGGGTEPTTEPTAEPTESPTTGTAPTGEPIKVG 59 Query: 60 QLHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLL 119 LHS +GTMAISET ++A LAI++INA GG+LGR I+ I+EDGASDWPTFAEKA KL+ Sbjct: 60 LLHSLSGTMAISETTVVEAAELAIEEINAAGGVLGRPIEAIKEDGASDWPTFAEKAAKLI 119 Query: 120 ENDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAG 179 + D+V VFGCWTSASRKAVLPVFE N +L+YP YEG E SKN+FYTG QQ+ Sbjct: 120 DQDKVPVVFGCWTSASRKAVLPVFEAKNHMLWYPVQYEGQECSKNIFYTGAAPNQQIEPA 179 Query: 180 LNWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLIN 239 ++W+ E K FFLVGSDY++PRT+N I ++ ++ G +GE+Y PLGNT+ +I Sbjct: 180 VDWLL-ENKGNKFFLVGSDYVFPRTANTIIKEQLK-AKGGETLGEDYLPLGNTEVTPIIT 237 Query: 240 KIKLKKPD--VIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEG 297 KI+ PD VIF + G SNVAF+KQ++AAG+T ++++SV E+E+ IG E + G Sbjct: 238 KIREALPDGGVIFNTLNGDSNVAFFKQIQAAGLTPDKYPVMSVSVAEEEVRQIGKEYLLG 297 Query: 298 FFASMKYFQSLDNPNNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSF--- 354 FAS YFQS+D P N+KFVA FKAK+G + V D +AAY+ +LWKAAVE AG Sbjct: 298 QFASWNYFQSVDTPANQKFVAAFKAKYGEDRVTNDPMEAAYISVYLWKAAVEAAGDVGET 357 Query: 355 --DVDKVVAASPGIELKTAPEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESE-LIEPN 411 ++KV AA+ G APEG V + NHH+ RIGE +GQF +V+ S+ ++P Sbjct: 358 PEGLEKVRAAAIGKTFD-APEGMVTMQPNHHISKTVRIGEVNDEGQFTIVWSSDGPVDPI 416 Query: 412 PF 413 P+ Sbjct: 417 PW 418 >all1951 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Nos Nostoc sp. PCC 7120 Length = 438 Score = 359 bits (922), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 193/408 (47%), Positives = 268/408 (65%), Gaps = 11/408 (2%) Query: 14 RRKILMGLAAGAAAAALPGMAS----AQQYPTAKVNTTKLAITD-TEVTVGQLHSATGTM 68 RR ++ G A ++ L A+ A P N + +A + + +G LHS +GTM Sbjct: 8 RRFLIYGSATIGSSILLKACANSTPNATNSPATSGNASPVAASGGNTIKIGILHSLSGTM 67 Query: 69 AISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKAKKLLENDRVAAVF 128 +ISE + AE+LAI +INA GG+LG++I+ I EDGAS+W TF EKA KL++ D+VA VF Sbjct: 68 SISEKSVVDAEKLAIKEINAAGGVLGKQIEAIVEDGASNWDTFREKATKLIDQDKVAVVF 127 Query: 129 GCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQVLAGLNWVAKEKK 188 GCWTSASRK V PVFE + +L+YP YEG E SKN+FYTG QQ+ ++W+ K K Sbjct: 128 GCWTSASRKNVKPVFESKDHMLWYPVQYEGQECSKNIFYTGAAPNQQIEPSVDWLLKN-K 186 Query: 189 AKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFGSLINKIKLKKPD- 247 K FFLVGSDY++PRT+N I + +E L G VGE+Y PLGNT+ +I+KIK P+ Sbjct: 187 GKEFFLVGSDYVFPRTANTIIKAQLE-ALGGKTVGEDYLPLGNTEVTPIISKIKQALPNG 245 Query: 248 -VIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENVEGFFASMKYFQ 306 VI+ + G SNVAF+KQLK AG+T +++S+ E+E+ IG E ++G +A+ YFQ Sbjct: 246 GVIYNTLNGDSNVAFFKQLKGAGLTPDKHPSMSVSIAEEEVKAIGVEYLKGHYAAWNYFQ 305 Query: 307 SLDNPNNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFDVDKVVAASPGI 366 ++D P NKKFV FK ++GA+ V D +AAY+ +LWK +VEKAGS D+ KV AA+ G Sbjct: 306 TVDTPANKKFVEAFKKEYGADRVTNDPMEAAYIAVYLWKQSVEKAGSPDLAKVRAAAYGQ 365 Query: 367 ELKTAPEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESEL-IEPNPF 413 + APEG V V+ NHH+ RIGE + DG F ++Y + +EP P+ Sbjct: 366 TID-APEGKVTVNTNHHISKIVRIGEVRDDGLFDIIYATPAPVEPVPW 412 >DRA0320 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 390 Score = 348 bits (893), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 188/361 (52%), Positives = 241/361 (66%), Gaps = 4/361 (1%) Query: 56 VTVGQLHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKA 115 V VG LHS TGTMAISE A +LA+D+INA GG+LG+K+ I++EDGASDWPTFA KA Sbjct: 24 VKVGVLHSLTGTMAISELTVANATQLAVDEINAAGGVLGKKLVIVKEDGASDWPTFATKA 83 Query: 116 KKLLENDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQ 175 +KLL DRVAAVFG WTSASRKA+LPVFEK+ GLL+YP +EG E S N+ YTG + QQ Sbjct: 84 EKLLTQDRVAAVFGGWTSASRKAMLPVFEKNKGLLFYPVQFEGNECSPNIIYTGAQPNQQ 143 Query: 176 VLAGLNWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEYYPLGNTQFG 235 L L W A K K FL+GSDY++PRT+N I +KHI + GEEY LG T+F Sbjct: 144 ALPALEW-ALSKGYKNIFLLGSDYVYPRTANLILKKHIA-ASGAKLAGEEYVALGGTEFS 201 Query: 236 SLINKIKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGENV 295 S+INKIK KP VI + G SNV+F+KQ +AAG +A T +++ S+ E E IG + + Sbjct: 202 SVINKIKAAKPQVIINTLNGDSNVSFFKQYQAAGYSAATLPVISFSIAEQEAQAIGPQLL 261 Query: 296 EGFFASMKYFQSLDNPNNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSFD 355 +G +A+ YFQSL NKKFVA +K K+GA +V+ D AYL +LWKAAVEKA SFD Sbjct: 262 QGQYATWNYFQSLPGAANKKFVAAYKKKYGAGAVVTDPMAHAYLDVYLWKAAVEKAKSFD 321 Query: 356 VDKVVAASPGIELKTAPEGYVKVHENHHLWSKTRIGEAQKDGQFKVVYESE-LIEPNPFP 414 V A G+ L + P G V V ++ L G++ GQFK V +S +++P P+ Sbjct: 322 PVAVRKAIVGVSLNS-PLGKVTVDKSGSLTQGVYTGQSGAGGQFKTVAQSRGVVQPQPYD 380 Query: 415 K 415 K Sbjct: 381 K 381 >BH0251 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bha Bacillus halodurans Length = 419 Score = 340 bits (873), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 174/374 (46%), Positives = 249/374 (66%), Gaps = 5/374 (1%) Query: 47 TKLAITDTEVTVGQLHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGAS 106 T++ + ++ VG LHS +GTMA+SET AE LAI++IN GG+LG+++ I EDGAS Sbjct: 37 TEVEVGSDQIAVGILHSLSGTMAMSETSVRDAELLAIEEINEAGGVLGKELVPIIEDGAS 96 Query: 107 DWPTFAEKAKKLLENDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVF 166 + FAE+A KLL+ D VA +FG WTSASRKA+LPV E++NGLL+YP YEG+E S N+F Sbjct: 97 EPNIFAERATKLLQQDEVAVIFGGWTSASRKAMLPVVEENNGLLFYPVQYEGMEASPNIF 156 Query: 167 YTGQEATQQVLAGLNWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIENVLKGSVVGEEY 226 Y G QQ++ + W+ E + FFL+GSDY++PR +N I + +E+ ++V E+Y Sbjct: 157 YAGAAPNQQIVPAVEWLL-ENRGTEFFLLGSDYVFPRLANAIIKAQLES-HGATLVDEQY 214 Query: 227 YPLGNTQFGSLINKIKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDE 286 PLG+T + ++I++I+ +P VIF + G SNVAF+KQL AG+TA ++++SV E+E Sbjct: 215 TPLGHTDYNTIISRIRESEPTVIFNTLNGDSNVAFFKQLADAGITADDVTVMSVSVAEEE 274 Query: 287 MLGIGGENVEGFFASMKYFQSLDNPNNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKA 346 + GIG + + G AS YFQ+ D P N FV + FG + V GD +A YL LW Sbjct: 275 IRGIGADVLAGHLASWNYFQTTDTPENDTFVTAYIKSFGDDRVTGDPIEAGYLMVHLWAQ 334 Query: 347 AVEKAGSFDVDKVVAASPGIELKTAPEGYVKVH-ENHHLWSKTRIGEAQKDGQFKVVYES 405 AVE AG+ D++ V A+ IE +AP G VKV +N HL+ RIGE Q DGQF+ V+ S Sbjct: 335 AVEAAGTTDIEAVREAASTIEF-SAPGGLVKVDGDNQHLYKTVRIGEVQADGQFEEVWNS 393 Query: 406 -ELIEPNPFPKGYQ 418 E ++P+PF + Y+ Sbjct: 394 GEPVKPDPFLEDYE 407 >Cgl0906 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Cgl Corynebacterium glutamicum Length = 423 Score = 326 bits (836), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 161/366 (43%), Positives = 244/366 (66%), Gaps = 7/366 (1%) Query: 56 VTVGQLHSATGTMAISETGSIQAERLAIDQINAMGGILGRKIKIIQEDGASDWPTFAEKA 115 + +G ++S +GTMAISET Q+ +A D+INA GG+LG++++I +EDGAS+ TFAE++ Sbjct: 53 IKIGFINSLSGTMAISETTVNQSLHMAADEINAAGGVLGKQLEISEEDGASEPATFAERS 112 Query: 116 KKLLENDRVAAVFGCWTSASRKAVLPVFEKDNGLLYYPTFYEGLEQSKNVFYTGQEATQQ 175 ++L++ + VAAVFG WTSASRKA+LPVFE +N LL+YP YEG+E S N+FYTG QQ Sbjct: 113 QRLIQQECVAAVFGGWTSASRKAMLPVFEGNNSLLFYPVQYEGMESSPNIFYTGATTNQQ 172 Query: 176 VLAGLNWVAKEKKAKTFFLVGSDYIWPRTSNKIARKHIE-NVLKGSVVGEEYYPLGNTQF 234 ++ L+++ +E FLVGSDY++PRT+N I + + E N ++ +VGE+Y PLG+T F Sbjct: 173 IIPALDYL-RENGLNRLFLVGSDYVFPRTANSIIKDYAEANGME--IVGEDYAPLGSTDF 229 Query: 235 GSLINKIKLKKPDVIFADVVGGSNVAFYKQLKAAGVTAKTQNLLTISVTEDEMLGIGGEN 294 ++ N+++ D +F + G SNVAF++Q + G A T ++++S+ E+E+ GIG N Sbjct: 230 TTIANRMRDSNADAVFNTLNGDSNVAFFRQYNSLGFNADTLPVMSVSIAEEEVGGIGTAN 289 Query: 295 VEGFFASMKYFQSLDNPNNKKFVAEFKAKFGANSVIGDVTQAAYLGPWLWKAAVEKAGSF 354 +EG + Y+Q++D P N+ FV FK +G + V D +AAY +LWK VEKA SF Sbjct: 290 IEGQLVAWDYYQTIDTPENETFVENFKDLYGQDKVTSDPMEAAYTSLYLWKEMVEKADSF 349 Query: 355 DVDKVVAASPGIELKTAPEGYVKVH-ENHHLWSKTRIGEAQKDGQFKVVYESEL-IEPNP 412 DV + AA+ G APEG V V +NHH+ RIG + DG ++E++ ++P+P Sbjct: 350 DVAAIQAAADGTTFD-APEGTVVVDGDNHHISKTPRIGRIRPDGLIDTIWETDSPVDPDP 408 Query: 413 FPKGYQ 418 + Y Sbjct: 409 YLSSYD 414