BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2654.p (232 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20212 [R] COG0693 Putative intracellular protease/amidase Sme... 221 1e-57 XF1137 [R] COG0693 Putative intracellular protease/amidase Xfa X... 157 3e-38 AGl1155 [R] COG0693 Putative intracellular protease/amidase Atu ... 150 3e-36 SMa1968 [R] COG0693 Putative intracellular protease/amidase Sme ... 149 4e-36 PA2719 [R] COG0693 Putative intracellular protease/amidase Pae P... 142 5e-34 >SMb20212 [R] COG0693 Putative intracellular protease/amidase Sme Sinorhizobium meliloti Length = 226 Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 148/226 (65%), Gaps = 2/226 (0%) Query: 3 TPNILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGRAPIDPGSVK 62 T ILM++TS R+G+T KPTG W EE AAPYY DAGA V +AS GG+ PIDP S + Sbjct: 2 TMKILMVLTSHDRLGNTGKPTGFWLEEFAAPYYVFKDAGAEVTLASPKGGQPPIDPKSDE 61 Query: 63 AQGQNDAIVERMLADAELQQRIAQTLPLGQVKVDAFDAVFIPGGHGTMWDLPTDANVKAT 122 Q A + R D ++ +A TL LG+VK + +DAVF PGGHG MWDL D N A Sbjct: 62 PASQT-AAMGRFKDDPAARKALANTLKLGEVKQEDYDAVFYPGGHGPMWDLVNDRNSIAL 120 Query: 123 VEAAFGAGKYIASVCHGAAGLVSAVRADGKPMVAGKRVNSFTDAEEREVGLAEVVPFLLE 182 +E + AGK +A+VCHG A +++ V G+P+V G+RV FT++EE V L +VVPFL+E Sbjct: 121 IEGFYDAGKPVAAVCHGPA-VLTQVTHLGEPIVKGRRVTGFTNSEEEAVQLTDVVPFLVE 179 Query: 183 SRLRELGGVFEGADNWQVFAVRDGQLITGQNPQSSERVAQVLLEAL 228 L+ LGG +E A +W F V DG+L+TGQNP SS A LL+ L Sbjct: 180 DELKRLGGRYEKAADWADFTVVDGRLVTGQNPSSSTSAASELLKLL 225 >XF1137 [R] COG0693 Putative intracellular protease/amidase Xfa Xylella fastidiosa 9a5c Length = 229 Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 6 ILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGRAPIDPGSVKAQG 65 IL +VTS GD+ +PTG EL P G V IAS GG PID + Sbjct: 8 ILCVVTSHPIRGDSGEPTGFAMVELTHPLEVFEAVGIPVEIASIRGGHPPIDFFDL---- 63 Query: 66 QNDAIVERMLADAELQQRIAQTLPLGQVKVDAFDAVFIPGGHGTMWDLPTDANVKATVEA 125 +D + +R + + +A + LG + + AVF GGHGTMWD V+ + Sbjct: 64 -SDPVNDRFWKNKAFRHALAHSFVLGDLDPLRYSAVFFVGGHGTMWDFADSLAVQNVIRG 122 Query: 126 AFGAGKYIASVCHGAAGLVSAVRADGKPMVAGKRVNSFTDAEEREVGLAEVVPFLLESRL 185 + +G +++VCHG A LV+A +DG +VAGK+V +FTD EE EV A VVP+LL + L Sbjct: 123 IWESGGIVSAVCHGPAALVNATLSDGSYLVAGKKVAAFTDEEETEVKYANVVPYLLATTL 182 Query: 186 RELGGVFEGADNWQVFAVRDGQLITGQNPQSSERVAQVLLEAL 228 ++ G + + A NW V DG+LITGQNP S+ V Q +++ L Sbjct: 183 KQRGALHQSAPNWVENIVVDGRLITGQNPASAYGVGQRVVDQL 225 >AGl1155 [R] COG0693 Putative intracellular protease/amidase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 230 Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 6 ILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGRAPIDPGSVKAQG 65 +L ++TS G+T +PTG + E+ P L AG +V AS GG+ P+D Sbjct: 11 VLFVLTSHGTKGETGEPTGFYLGEVTHPLAVLDAAGIAVEFASIDGGKPPVD-----GLD 65 Query: 66 QNDAIVERMLADAELQQRIAQTLPLGQVKVDAFDAVFIPGGHGTMWDLPTDANVKATVEA 125 ND R + I T L + + A+F GGHG MWD PT V + Sbjct: 66 LNDPTNARYWNSEGFRGAIRNTSRLADLDPKNYAAIFFAGGHGAMWDFPTSPAVNDFTRS 125 Query: 126 AFGAGKYIASVCHGAAGLVSAVRADGKPMVAGKRVNSFTDAEEREVGLAEVVPFLLESRL 185 + AG +A+VCHG A LV+ +DG +VAGK V +FTD EER V L +VPFLL S L Sbjct: 126 IYEAGGVVAAVCHGPAALVNVTLSDGAHLVAGKNVAAFTDDEERAVKLDRIVPFLLASTL 185 Query: 186 RELGGVFEGADNWQVFAVRDGQLITGQNPQSSERVAQVLLEAL 228 G A +W V DG+L+TGQNPQS+ V + L + L Sbjct: 186 TMRGAHHYPAADWTAKVVVDGRLVTGQNPQSATGVGEALRDLL 228 >SMa1968 [R] COG0693 Putative intracellular protease/amidase Sme Sinorhizobium meliloti Length = 242 Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 6 ILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGRAPIDPGSVKAQG 65 +L ++TS S G+T + TG + E+ P L AG V AS AGG P+D Sbjct: 23 VLFVLTSHSVKGETGEYTGFYLGEVTHPLAVLDAAGIPVEFASIAGGEPPVD-----GLD 77 Query: 66 QNDAIVERMLADAELQQRIAQTLPLGQVKVDAFDAVFIPGGHGTMWDLPTDANVKATVEA 125 +DA+ R + I T L V + A+F GGHG MWD PT V + Sbjct: 78 LHDAVNARYWNSEGFRHAIRNTSRLSDVDPKDYSAIFFAGGHGAMWDFPTSPAVNSVARD 137 Query: 126 AFGAGKYIASVCHGAAGLVSAVRADGKPMVAGKRVNSFTDAEEREVGLAEVVPFLLESRL 185 + AG +A+VCHG A LV+ + G +VAGK V +FTD EER V L + VPFLL S L Sbjct: 138 IYEAGGVVAAVCHGPAALVNITLSSGAHLVAGKNVAAFTDDEERAVKLDKTVPFLLASTL 197 Query: 186 RELGGVFEGADNWQVFAVRDGQLITGQNPQSSERVAQVLLEAL 228 G A +W V DG+L+TGQNPQS+ V + L + L Sbjct: 198 SARGAHHHPAADWAAKIVVDGRLVTGQNPQSATGVGEALRDLL 240 >PA2719 [R] COG0693 Putative intracellular protease/amidase Pae Pseudomonas aeruginosa Length = 228 Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 2/228 (0%) Query: 3 TPNILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGASVVIASTAGGRAPIDPGSVK 62 T IL +VT+ + D +PTGLW EL Y G + S GG +P++P ++ Sbjct: 2 TKRILHVVTNVAHYADPTQPTGLWLSELTHAYEIFAARGYQQRLVSPRGGESPLEPRAL- 60 Query: 63 AQGQNDAIVERMLADAELQQRIAQTLPLGQVKVDAFDAVFIPGGHGTMWDLPTDANVKAT 122 DA + LAD +A T QV +AFDA++ GGHG MWD P DA ++ Sbjct: 61 GWPHADASAKAWLADETRLALLADTAAPEQVDAEAFDAIYFTGGHGVMWDFPDDAGLQHL 120 Query: 123 VEAAFGAGKYIASVCHGAAGLVSAVRADGKPMVAGKRVNSFTDAEEREVGLAEVVPFLLE 182 + G ++SVCHG GL++ DG+ +VAG+R+ ++ EE G+A VP+ +E Sbjct: 121 TREIYQRGGIVSSVCHGYCGLLNTRLDDGRLLVAGRRLTGYSWIEEVLAGVARKVPYNVE 180 Query: 183 SRLRELGGVFEGA-DNWQVFAVRDGQLITGQNPQSSERVAQVLLEALG 229 ++ G ++E + + V DG+L+TGQNPQS++ A+ + LG Sbjct: 181 EEMKRRGALYERSLLPFTSKVVVDGRLVTGQNPQSAKATAEQVAALLG 228