BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2636.p (182 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0040 [TK] COG4567 Response regulator consisting of a CheY-lik... 237 1e-62 PA4493 [TK] COG4567 Response regulator consisting of a CheY-like... 179 3e-45 XF2578 [TK] COG4567 Response regulator consisting of a CheY-like... 158 8e-39 mlr5308 [TK] COG4567 Response regulator consisting of a CheY-lik... 148 7e-36 BMEI1811 [TK] COG4567 Response regulator consisting of a CheY-li... 144 9e-35 >RSc0040 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Rso Ralstonia solanacearum Length = 192 Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 123/191 (64%), Positives = 142/191 (74%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G EAL AR+ F + T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP+AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHAAEGAAAAEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL A A + +E +PLS+ RLEWEHIQRVL+EH GNIS+TARALNMHRRTL Sbjct: 125 LALQVGVSEAVAEQ---TMENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >PA4493 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Pae Pseudomonas aeruginosa Length = 186 Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/180 (52%), Positives = 125/180 (69%), Gaps = 10/180 (5%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L++DD+ F LAR+++RRG R + A S EE L A+++ D+A +DL++E DSGL Sbjct: 15 LLLVDDDPTFTRVLARAMSRRGLRVSTAGSAEEGLALAQQDTPDYAVLDLKMEGDSGLVL 74 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSAL--SHAAEGAA 122 + L + R+++LTGY+SIAT V+AIK GA NYL KPA+ D +L+AL HA Sbjct: 75 LPKLLELHADMRVVILTGYSSIATAVEAIKRGACNYLCKPADADDVLAALLSEHADLDTL 134 Query: 123 AAEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPVAR 182 E +P+S++RL+WEHIQRVLAEHEGNIS+TARAL MHRRTLQRKL KRPV R Sbjct: 135 VPE--------NPMSVDRLQWEHIQRVLAEHEGNISATARALGMHRRTLQRKLQKRPVRR 186 >XF2578 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Xfa Xylella fastidiosa 9a5c Length = 192 Score = 158 bits (399), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 88/175 (50%), Positives = 113/175 (64%), Gaps = 3/175 (1%) Query: 6 LILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQWV 65 L++DD+ ++ TL RSL RRG A AL AAR FA +DL+L +DSGL + Sbjct: 10 LLVDDDTLYLRTLQRSLGRRGVDTVTATDTVSALTAARSMLPSFALLDLKLGQDSGLALI 69 Query: 66 SPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSH-AAEGAAAA 124 LR R+L++TGYASIAT V+AIK GAD YL KPAN+++IL A+S A G Sbjct: 70 QELRAIRSDMRILLVTGYASIATAVEAIKRGADEYLPKPANINTILRAISEDTANGLTPD 129 Query: 125 EPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRP 179 + + +PLS RL+WEHIQ+ L E +GNIS+ AR L MHRR+LQRKL KRP Sbjct: 130 KDESALHTMTPLS--RLQWEHIQQALHETDGNISAAARLLGMHRRSLQRKLTKRP 182 >mlr5308 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Mlo Mesorhizobium loti Length = 187 Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 81/175 (46%), Positives = 112/175 (64%), Gaps = 7/175 (4%) Query: 4 AFLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQ 63 + LI+DD+ F + LAR++ RGF A S EEA+ AR +A +D++L +GL Sbjct: 17 SLLIVDDDKPFLTRLARAMETRGFVVETAESVEEAVGKARANPPAYAVVDMRLGDGNGLD 76 Query: 64 WVSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAA 123 V+ +R+ +R ++LTGY +IAT V A+K GA +YL+KPA+ D I +AL+ + G A Sbjct: 77 VVAAIREKREDSRTIILTGYGNIATAVTAVKLGAVDYLSKPADADDIFAALTRTS-GERA 135 Query: 124 AEPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 A P +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 136 APP------ENPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 184 >BMEI1811 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain Bme Brucella melitensis Length = 187 Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 78/174 (44%), Positives = 107/174 (61%), Gaps = 7/174 (4%) Query: 5 FLILDDNDVFASTLARSLARRGFRATVAHSGEEALEAARRERFDFATIDLQLEKDSGLQW 64 L++DD+ F LAR++ RGF+ T A S EE + A + +A +D++L +GL Sbjct: 18 LLLVDDDKPFLQRLARAMESRGFQVTTAESVEEGIAAVKTSAPAYAVVDMRLGDGNGLNI 77 Query: 65 VSPLRQALPQARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHAAEGAAAA 124 + +R R +VLTGY +IAT V A+K GA +YL+KPA+ D + +AL+ Sbjct: 78 IEAIRSRRADTRAIVLTGYGNIATAVNAVKLGAIDYLSKPADADEVFAALTR-----RPG 132 Query: 125 EPVLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKR 178 E V P E +P+S +R+ WEHIQRV E N+S TAR LNMHRRTLQR LAKR Sbjct: 133 EKVAPPE--NPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKR 184