BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2623.p         (64 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1482 Non COG                                                        77   8e-15
PA3012 [S] COG4728 Uncharacterized protein conserved in bacteria...    47   1e-05
CAC1208 [S] COG4728 Uncharacterized protein conserved in bacteri...    31   0.85 
SMa0934 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alph...    28   5.8  
BH2723 [G] COG3250 Beta-galactosidase/beta-glucuronidase Bha Bac...    28   6.6  

>RSc1482 Non COG
          Length = 69

 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 3  RYRHYKGGIYEYIDEAILEADLTP-MIIYRAADGRLWLRPREAFFELVEVDGRQTPRFEK 61
          RYRHYKGG YE++ EA  E D T  M +YRAA+G +W+RP   F E+VEVDGRQ PRF  
Sbjct: 8  RYRHYKGGEYEWLCEATYEPDPTVRMTVYRAANGTVWVRPSAMFHEMVEVDGRQVPRFAP 67

Query: 62 IE 63
          I+
Sbjct: 68 ID 69


>PA3012 [S] COG4728 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 124

 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 4   YRHYKGGIYEYIDEAILEADLTPMIIYRAADGR--LWLRPREAFFELVEVDGRQTPRF 59
           YRHYKG  Y  +  A        ++IY+A  G   LW+RP E F E VEVDG   PRF
Sbjct: 45  YRHYKGQNYRVLGVARHSETEEALVIYQALYGEFGLWVRPLEMFTEAVEVDGEWVPRF 102


>CAC1208 [S] COG4728 Uncharacterized protein conserved in bacteria Cac
           Clostridium acetobutylicum
          Length = 173

 Score = 30.8 bits (68), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 4   YRHYKGGIYEYIDEAILEADLTPMIIYRAADG--RLWLRPREAFFELVEVDGRQTPRFEK 61
           YRH+KG  Y+ +  A    D   +++Y+A  G  ++++RP + F  + +VD  + P  E+
Sbjct: 83  YRHFKGNYYKVLYIAENSEDKEKVVVYQAMYGEKKVYVRPFKMF--ISKVDHCKYPEIEQ 140


>SMa0934 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit
          - helicase superfamily I member Sme Sinorhizobium
          meliloti
          Length = 1539

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 7  YKGGIYEYIDEAILEADLTPMIIYRAADGRLWLRPREAFFELVEV 51
          Y+GG  E + E +   D  P  +  A DGR   +  EA +  VE 
Sbjct: 42 YRGGASELVHEELALPDDIPAWLRAAIDGRSVAKASEALWNAVEA 86


>BH2723 [G] COG3250 Beta-galactosidase/beta-glucuronidase Bha Bacillus
           halodurans
          Length = 1014

 Score = 27.7 bits (60), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 3   RYRHYKGG-IYEYIDEAILEADLTPMIIYRAADGRLWLRPREAFF---ELVEVDGRQTPR 58
           +Y  Y+GG I++YID+A+L+ D      Y A  G    RP +  F    +V  D + +P+
Sbjct: 548 KYPMYQGGFIWDYIDQALLKKDRYGK-EYFAYGGDFGDRPTDYSFCANGIVYADRKPSPK 606

Query: 59  FEKIE 63
            ++++
Sbjct: 607 MQEVK 611