BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2606.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MTH446_1 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus    95   5e-20
MTH902_1 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus    91   9e-19
AGc3616_1 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C...    82   4e-16
XF1455_1 [T] COG0784 FOG Xfa Xylella fastidiosa 9a5c                   79   3e-15
DR1175_1 [T] COG0784 FOG Dra Deinococcus radiodurans                   70   2e-12

>MTH446_1 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus
          Length = 130

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 1   MSIPLRVLFVEDMEEDAVLMVRELKRGGFEPSWQRVDDEQALLAALHEQRWDIVISDYSM 60
           MS  L+VL +ED+  DA L++REL+R G E     VD E +   AL E   DI+++D+++
Sbjct: 1   MSEKLKVLILEDVPLDAELVIRELQRDGIEFEHLTVDSEDSFRRALEEFSPDIILADHAL 60

Query: 61  PMFSGVEALKLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLSSRW 110
           P F GV AL++V+ + D  PFI VSG IGE+ AV+++KAGA DY L +  
Sbjct: 61  PSFDGVSALRIVRENYD-IPFIFVSGKIGEEFAVDMLKAGATDYVLKNNL 109


>MTH902_1 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus
          Length = 120

 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%)

Query: 5   LRVLFVEDMEEDAVLMVRELKRGGFEPSWQRVDDEQALLAALHEQRWDIVISDYSMPMFS 64
            R+L +ED+  D  LM RE++R G E   +  D+E+  + A+ E R D++++D+S+P F 
Sbjct: 3   CRILILEDVPLDVELMEREIRRAGIEFISETADNEEDFIRAIDEFRPDVILADHSLPSFD 62

Query: 65  GVEALKLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLSSRW 110
           G+ AL + +      PFI VSG IGE+ AVE +KAGA DY L S +
Sbjct: 63  GLSALSIARERCPWVPFIFVSGKIGEEFAVEALKAGATDYVLKSNF 108


>AGc3616_1 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 128

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 63/105 (60%)

Query: 6   RVLFVEDMEEDAVLMVRELKRGGFEPSWQRVDDEQALLAALHEQRWDIVISDYSMPMFSG 65
           R+L +ED   DA L+  +L R    P+  R   + + + AL +Q++DI+++D+S+P F G
Sbjct: 17  RLLLLEDSSVDAELIEDQLSRLSPPPAVTRAVGKASFIEALEKQQFDIILADFSLPDFDG 76

Query: 66  VEALKLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLSSRW 110
           + AL LV      TPFI VSG++GE  A++  + GA DY L  R 
Sbjct: 77  MSALDLVMRTRPDTPFIFVSGILGEDAAIDAFRRGATDYVLKQRL 121


>XF1455_1 [T] COG0784 FOG Xfa Xylella fastidiosa 9a5c
          Length = 132

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 60/95 (63%), Gaps = 1/95 (1%)

Query: 12  DMEEDAVLMVRELKRGGFEPSWQRVDDEQALLAALHEQRWDIVISDYSMPMFSGVEALKL 71
           D  EDA L+   L+  G + S++RV+ E AL  AL+    DIV+SD SMP F G +AL++
Sbjct: 18  DSLEDAKLLFNTLREAGLDGSFERVESESALREALYLFAPDIVLSDLSMPGFPGYQALRV 77

Query: 72  VKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFL 106
           V+ +   TPFI VS  +GE  AVE ++ GA DY +
Sbjct: 78  VR-EVGNTPFIFVSSKMGEDIAVEALQEGANDYII 111


>DR1175_1 [T] COG0784 FOG Dra Deinococcus radiodurans
          Length = 115

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 8   LFVEDMEEDAVLMVRELKRG-GFEPSWQRVDDEQALLAALHEQRWDIVISDYSMPMFSGV 66
           + +ED E D  L+   L+   G + + QRV+DE+  L AL E    IV+SD+++P + G+
Sbjct: 1   MHLEDSELDHELVSMALEGDLGRDLTIQRVEDEEGFLTALRESPPHIVLSDFALPGYDGL 60

Query: 67  EALKLVKADNDQTPFIIVSGVIGEQTAVEVMKAGAQDYFLSSRW 110
            A           PFIIV+G +GE+ AV+ ++ G  DY L +R 
Sbjct: 61  SAFHAAHQLEPNLPFIIVTGAMGEEVAVDTLRQGVTDYILKARL 104