BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2601.p (443 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr5223 Non COG 436 e-122 AGpA777 Non COG 423 e-118 AGc4134 [E] COG0683 ABC-type branched-chain amino acid transport... 41 0.007 RSc3061 [E] COG0683 ABC-type branched-chain amino acid transport... 40 0.013 DRA0263 [E] COG0683 ABC-type branched-chain amino acid transport... 35 0.25 >mlr5223 Non COG Length = 445 Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/436 (50%), Positives = 294/436 (67%), Gaps = 7/436 (1%) Query: 4 MKHLRQLVLATTCAAGLLSAAVPALAQSNEQFIAIPSYRVGPYGTNGQSYYGGYVDYLNY 63 M L + A AA ++S A+PA A ++EQ+ + SYRVGPY G ++GG++DYLN Sbjct: 1 MNFLSTIKAAALSAAMIVSVALPA-AHADEQYFPLQSYRVGPYAAGGTGFFGGFIDYLNL 59 Query: 64 VNLKEGGINGVKLSWEECETEYNNAKGVECYERMKNKNPVTHGTAINPMATGISYALIDK 123 +N+++GG+NGVKL+W+ECET+Y +GVECYER K+ A NP++ GI+YA+ID+ Sbjct: 60 INIRDGGVNGVKLTWDECETQYEVERGVECYERQKSH---AGAAAWNPLSVGIAYAMIDR 116 Query: 124 TAEDKVPLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNG--SLAGKKI 181 DKVPL+ + +GRTD+ DG VFPY FPL+ + S IV Y+A K G L GKKI Sbjct: 117 ITADKVPLITVNHGRTDSTDGRVFPYVFPLLLNPYSETSGIVNYIAAKEGGIDKLKGKKI 176 Query: 182 VFLYHDSAYGKEPIVALQAEASIGKFKLVEIPVAHPGNEQGAQWLRIRQENPDYVIFWGW 241 V LYH S YGKE I + A F + +I V HPGNEQ +QWL IR+ PD+V+ GW Sbjct: 177 VVLYHGSPYGKETIPIYELLAQKYGFTVQQIEVPHPGNEQQSQWLTIRRAKPDFVVLRGW 236 Query: 242 GVMNQTALKAAQKVGYARDKIIGSWWAGSEEDTIPAGEAAKGYLSATWNVAGKDVPVIAD 301 GVMN ALK A KVGY D I+G+ W+ SEED IPAG+AA+GY + T +G PV+ + Sbjct: 237 GVMNPVALKTAVKVGYPVDHIVGNVWSNSEEDVIPAGDAARGYTAITTQASGNTYPVVQE 296 Query: 302 IDKVVYGAGKGNMQDKNKLGSILYNRGVSAAIATVEAVRTAQAKFGKGKVMSGEQVRWGF 361 I K VYGAGKGN++DK+++GS+ +N G+ I VEA+R AQ KFG + ++G++VRWGF Sbjct: 297 IVKTVYGAGKGNLEDKSRIGSVYHNLGIVNGILNVEAIRVAQEKFGH-RTLTGDEVRWGF 355 Query: 362 ENLNITDARLKALGATGLLPEIKTSCENHEGSGKVKIQQWDGSKWVLVSDWIEGNKNLIH 421 E+L + A+++ALGA L I S +NHEG G V QQWDG KW +VSDWI + L+ Sbjct: 356 EHLKLDPAKVEALGAKDLFHSINVSWDNHEGEGYVTFQQWDGKKWNVVSDWIAPDWALLR 415 Query: 422 PLFKASAAKYAKEKGI 437 P+ + SA YA EKGI Sbjct: 416 PIIEKSAEAYAAEKGI 431 >AGpA777 Non COG Length = 457 Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/430 (50%), Positives = 288/430 (66%), Gaps = 8/430 (1%) Query: 11 VLATTCAAGLLSAAVPALAQSNEQFIAIPSYRVGPYGTNGQSYYGGYVDYLNYVNLKEGG 70 + A AAG+ +A+ A ++EQ + SYRVGPY G ++GG++DYLN +N+++GG Sbjct: 20 IKAAAFAAGISLSAIAFPAMADEQHFPLQSYRVGPYAAGGTGFFGGFIDYLNLINVRDGG 79 Query: 71 INGVKLSWEECETEYNNAKGVECYERMKNKNPVTHGTAI-NPMATGISYALIDKTAEDKV 129 +NGVKL+W E ET+Y +GVE YER+K+ HG A NP++ GI+YA+ID+ +DKV Sbjct: 80 VNGVKLTWSEAETQYEVERGVEAYERLKS----NHGIAAWNPLSVGIAYAMIDRITQDKV 135 Query: 130 PLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNG--SLAGKKIVFLYHD 187 PL+ I +GRTD+ DG VFPY FPL+ + S IV Y+A K G L GKKIV LYH Sbjct: 136 PLITINHGRTDSTDGRVFPYVFPLLLNPYSETSGIVNYIASKEGGLEGLKGKKIVVLYHG 195 Query: 188 SAYGKEPIVALQAEASIGKFKLVEIPVAHPGNEQGAQWLRIRQENPDYVIFWGWGVMNQT 247 S YGKE I A F L +I V HPGNEQ +QWL IR+ PDYV+ GWGVMN Sbjct: 196 SPYGKETIPIYDLLAKKYGFDLQQIEVPHPGNEQQSQWLTIRRAKPDYVVLRGWGVMNPV 255 Query: 248 ALKAAQKVGYARDKIIGSWWAGSEEDTIPAGEAAKGYLSATWNVAGKDVPVIADIDKVVY 307 ALK A K G+ D IIG+ W+ SEED IPAG AAKGY + T +G + PV+ +I K +Y Sbjct: 256 ALKTAAKTGFPVDHIIGNVWSNSEEDVIPAGAAAKGYTAITTQASGAEYPVVKEIVKTLY 315 Query: 308 GAGKGNMQDKNKLGSILYNRGVSAAIATVEAVRTAQAKFGKGKVMSGEQVRWGFENLNIT 367 GKGN++DK+++GS+ +N G+ I VEAVR AQ KFGK + ++G++VRWGFE+L + Sbjct: 316 DQGKGNLEDKSRIGSVYHNLGIVNGILNVEAVRIAQDKFGK-RTLTGDEVRWGFEHLQLD 374 Query: 368 DARLKALGATGLLPEIKTSCENHEGSGKVKIQQWDGSKWVLVSDWIEGNKNLIHPLFKAS 427 AR++ALGA L I + +NHEG+G V QQWDG KW +VSDWI + L+ P+ + S Sbjct: 375 PARVEALGARDLFHSINVTWDNHEGNGYVTFQQWDGKKWNVVSDWIAPDWALLRPIIEKS 434 Query: 428 AAKYAKEKGI 437 + YA EKGI Sbjct: 435 SEAYAAEKGI 444 >AGc4134 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 368 Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust. Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 22/241 (9%) Query: 4 MKHLRQLVLATTCAAGLLSAAVPALAQSNEQFIAIPSYRVGPYGTNGQSYYGGYVDYLNY 63 +K L + LA + A L+ A E I + + GP G G ++ Sbjct: 3 LKTLTSVTLAASFAFAPLAHA--------EIVIGLIAPLTGPVAAYGDQVKNGAQTAVSE 54 Query: 64 VNLKEGGINGVKLSWEECETEYNNAKGVECYERMKNKNPVTHGT--AINPMATGISYALI 121 +N K+GGI G ++ + + +GV ++ V G + P+ +G++ Sbjct: 55 IN-KKGGILGEQVVLKLADDGGEPKQGVSAANQL-----VAEGIHFVVGPVTSGVAIPAS 108 Query: 122 DKTAEDKVPLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNGSLAGKKI 181 D AE+ V L++ + F Q KY+ +L GKKI Sbjct: 109 DVFAENGV-LMVTPTATAPGLTNRGLSNVFRTCGRDDQQAEVAAKYVLA----NLKGKKI 163 Query: 182 VFLYHDSAYGKEPIVALQAEASIGKFKLVEIPVAHPGNEQ-GAQWLRIRQENPDYVIFWG 240 ++ AYGK + +A + G V PG + GA R++ +N D V F G Sbjct: 164 AIIHDKGAYGKGLADSFKATLNAGGVTEVLYDALTPGEKDLGALTARLKSDNADIVYFGG 223 Query: 241 W 241 + Sbjct: 224 Y 224 >RSc3061 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 388 Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 15/159 (9%) Query: 44 GPYGTNGQSYYGGYVDYLNYVNLKEGGINGVKLSWEECETEYNNAKGVECYERM-KNKNP 102 G G + G Y +++NL GGI+G + + E + V M K NP Sbjct: 48 GSQAVTGHALNAGARLYFDWLNLN-GGIHGETVRLVARDDEQKVEQTVRNVRDMAKVDNP 106 Query: 103 VTHGTAINPMATGISYALIDK--TAEDKVPLVMIGYGRTDAVDGSVFPYAFPLVTTYQMQ 160 V T + T AL+ + AE ++PLV G + P FP+ +Y+ + Sbjct: 107 VALLTVVG---TANVEALMREGVLAEARLPLVGPATGASSMTGD---PLVFPIKASYRQE 160 Query: 161 VSAIVKYLAGKNNGSLAGKKIVFLYHDSAYGKEPIVALQ 199 + ++ L ++ +I LY D A GKE I ++ Sbjct: 161 IDKMITALV-----TIGITRIGVLYQDDALGKEAIAGVE 194 >DRA0263 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 424 Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 15/201 (7%) Query: 62 NYVNLKEGGINGVKLSWEECETEYNNAKGVECYERM--KNKNPVTHGTAINPMATGISYA 119 N V L I G K+S+ + + V ++ +NK + GT P S A Sbjct: 87 NTVALLPKTIGGEKVSYIILDDASDTTAAVTAARKLVQENKVDLILGTTTTPA----SLA 142 Query: 120 LIDKTAEDKVPLVMIGYGRT--DAVDGSVFPYAFPLVTTYQMQVSAIVKYLAGKNNGSLA 177 LID AE K P++ + VDG + F T + +AI ++A NG Sbjct: 143 LIDVAAESKTPMISLAASEAIIKPVDGK-RNWVFKTPQTDAIMAAAIADHMA--KNGV-- 197 Query: 178 GKKIVFLYHDSAYGKEPIVALQAEASIGKFKLVEIP-VAHPGNEQGAQWLRIRQENPDYV 236 K + ++ + AYG+ + QA A+ K+V A Q L+I PD V Sbjct: 198 -KTVGYIGFNDAYGEGWLSEFQAVAAKKGLKIVATERYARNDTSVTGQALKIFAARPDAV 256 Query: 237 IFWGWGVMNQTALKAAQKVGY 257 + GV KA + GY Sbjct: 257 LIGAAGVPAVLPQKALNERGY 277