BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2594.p (1034 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 308 3e-83 SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti 254 5e-67 sll0267_6 [T] COG2200 FOG Syn Synechocystis 251 8e-66 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 251 8e-66 PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa 249 2e-65 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 308 bits (790), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 194/458 (42%), Positives = 270/458 (58%), Gaps = 18/458 (3%) Query: 561 LTISAVKNKDHQITHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIA 620 L +SAV+ D + T ++ AE RIR+LA +D LT L NRT ++L +A Sbjct: 306 LKVSAVRANDGSYIGPMLTWALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLA 365 Query: 621 LSLRTRTCGALLFIDLDHFKTLNDTVGHEKGDVLLKQVAQRVVANV-RENDTVARVGGDE 679 + R LL+IDLD FK +NDT GH GD LL++VAQR+ A R +AR+GGDE Sbjct: 366 -APEARL--GLLYIDLDGFKLVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDE 422 Query: 680 FVVVLEGLNDTQQEAATQTRAIGEKILAALGETYQLD-DVEYRTTASIGATVFLGRAASV 738 F V++ +D AAT A+ E ALG Y L D R ASIG + Sbjct: 423 FAVLVP--HDDADRAATLATALIE----ALGAPYALGADQNVRIGASIGIALAPAHGRDT 476 Query: 739 DELMKQADLAMYKAKETGRNSLRFFDPAMQTAVLERATLEAGLRKAIE-SNQLLLHYQPQ 797 + L+ +AD+A+Y AK G+ R F M+T + RA LEA LR A+E ++L + YQP Sbjct: 477 ENLLARADIALYAAKAAGKGLARLFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPI 536 Query: 798 V-VDGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACKQLAEWAK 856 V V G+VT E LVRW H +RG VPP +F+P+AE++GLI LG +VL AC++ W Sbjct: 537 VDVATGKVTAREALVRWHHAERGWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWED 596 Query: 857 RARMDELSIAVNVSAPQLREPDFVQTVLDIIERTGANPRRLKLELTESLLVDNVEDIIQK 916 AR +AVNVS QL + QTV + +G P RL++E+TE+ L+ N + + Sbjct: 597 GAR-----VAVNVSPMQLGKATLAQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFED 651 Query: 917 MFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNL 976 + L GV +LDDFGTGYSSL++L+ P +++KID+SFVRD+L P+ A + + I +L Sbjct: 652 LRQLYDMGVRVALDDFGTGYSSLAHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADL 711 Query: 977 AQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFCRP 1014 + LG+ +AEGVET A + +AGC QGYY+ RP Sbjct: 712 GRQLGVTTVAEGVETQAHVRGIREAGCTEAQGYYYGRP 749 >SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 257 Score = 254 bits (650), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 128/242 (52%), Positives = 171/242 (70%), Gaps = 2/242 (0%) Query: 781 LRKAIESNQLLLHYQPQV-VDGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSL 839 LR+A+ + LLH+QPQ+ ++ GR+ AE L+RWQHP RG++ P FIPLAEETGLI+ + Sbjct: 9 LREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAFIPLAEETGLIVPI 68 Query: 840 GNWVLETACKQLAEWAKRARMDELSIAVNVSAPQLREPDFVQTVLDIIERTGANPRRLKL 899 G+WVL TAC+QL W + A + L ++VNVSA Q RE ++ V ++E T R L+L Sbjct: 69 GDWVLRTACRQLKAW-QDAGLPPLIVSVNVSARQFRERNWAARVAAVLEETCLEARYLEL 127 Query: 900 ELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRD 959 ELTESL++ +V I M AL+A GV ++DDFGTGYSSLS LKR P+ +LKID+SFV D Sbjct: 128 ELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFPVRRLKIDRSFVTD 187 Query: 960 VLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFCRPVAVEA 1019 + D +D +I I++LAQ LGL VIAEGVET+AQ FL +GC QGY+F +P+ E Sbjct: 188 IPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEIQGYFFSQPLPGED 247 Query: 1020 FE 1021 FE Sbjct: 248 FE 249 >sll0267_6 [T] COG2200 FOG Syn Synechocystis Length = 253 Score = 251 bits (640), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 120/249 (48%), Positives = 170/249 (68%), Gaps = 2/249 (0%) Query: 774 RATLEAGLRKAIESNQLLLHYQPQVVDGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEET 833 R LEA LR A+E Q ++ QPQV G GAE L+RW HP RG +PP FIP+AEE Sbjct: 2 RFALEADLRSALEQKQFQVYLQPQVDSHGVWIGAEALLRWNHPGRGFIPPNIFIPIAEEI 61 Query: 834 GLILSLGNWVLETACKQLAEWAKRARMDELSIAVNVSAPQLREPDFVQTVLDIIERTGAN 893 GLI +G++VLE C+ LA + L IA+NVS Q R+ +F + + +++ TG + Sbjct: 62 GLIGGIGDFVLEQVCQYLARLQQLGLT--LRIAINVSPRQFRQANFAKEIKNLLACTGVD 119 Query: 894 PRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKID 953 P RL LE+TE L+V++ I MF L+ G+ FS+DDFGTGYSSLSYLKRLPLN+LKID Sbjct: 120 PYRLTLEVTEGLIVEDTHQAIATMFELQTLGIHFSVDDFGTGYSSLSYLKRLPLNELKID 179 Query: 954 QSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFCR 1013 ++FV+D D N+A++ + I+++A++ L ++AEGVET+ Q FLA GC+ YQGY++ R Sbjct: 180 RAFVQDAPQDLNNAALVEAIISVARTFNLAIVAEGVETEEQVQFLAQLGCNFYQGYFYGR 239 Query: 1014 PVAVEAFEK 1022 P+ ++ F + Sbjct: 240 PMPIDEFHQ 248 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 251 bits (640), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 129/259 (49%), Positives = 172/259 (66%), Gaps = 2/259 (0%) Query: 762 FFDPAMQTAVLERATLEAGLRKAIESNQLLLHYQPQV-VDGGRVTGAEVLVRWQHPQRGM 820 FF+ +M T V ++ L LR A+E ++L+LHYQP+ G V G E LVRWQHP+RG+ Sbjct: 3 FFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERGL 62 Query: 821 VPPGDFIPLAEETGLILSLGNWVLETACKQLAEWAKRARMDELSIAVNVSAPQLREPDFV 880 V P FIPLAE+TGLI+ LG WVL+ AC+Q+A+W +R + SIAVN+SA Q V Sbjct: 63 VQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQW-RREGHAQWSIAVNLSAVQFAHAALV 121 Query: 881 QTVLDIIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLS 940 TV D + R P+ L LE+TES + + + + + L A GV S+DDFGTGYSSL Sbjct: 122 DTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLL 181 Query: 941 YLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLAD 1000 YLKRLP ++LKID+ FVRD+ D DA+I +V L Q+L L ++AEGVET+AQ++FL Sbjct: 182 YLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTR 241 Query: 1001 AGCHAYQGYYFCRPVAVEA 1019 GCHA QG RP+ +A Sbjct: 242 LGCHALQGNLLGRPMTAQA 260 >PA0575_4 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 267 Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/258 (48%), Positives = 177/258 (68%), Gaps = 5/258 (1%) Query: 773 ERATLEAGLRKAIESNQLLLHYQPQV-VDGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAE 831 ER LE LR+A+E ++L L+YQP++ ++ G + GAE LVRW HP G + P FIPLAE Sbjct: 1 ERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISPERFIPLAE 60 Query: 832 ETGLILSLGNWVLETACKQLAEWAK-RARMDELSIAVNVSAPQLREPDFVQTVLDIIERT 890 + GLIL LG+WVLE AC+Q+ EW K A LS VN++ QL +P ++ + ++E++ Sbjct: 61 DCGLILPLGDWVLEHACQQMGEWQKLHAPFGPLS--VNLAGAQLGQPQLIERLEQLLEQS 118 Query: 891 GANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQL 950 G P RL+LE+TES +++ E+ + + LK GV+ ++DDFGTGYSSLSYLKRLPL+ L Sbjct: 119 GLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLPLDIL 178 Query: 951 KIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYY 1010 KID+SF+R + DP+DA+I + I+ L +S+ L VIAEGVET+ Q+SFL GC QG+ Sbjct: 179 KIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFV 238 Query: 1011 FCRPVAVEAF-EKFTQDR 1027 P+ E F KF + R Sbjct: 239 LSPPLPAELFASKFLKPR 256