BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2593.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1461 [ET] COG0834 ABC-type amino acid transport/signal transdu... 44 5e-04 SPy1274 [ET] COG0834 ABC-type amino acid transport/signal transd... 42 0.002 BS_yqiX [ET] COG0834 ABC-type amino acid transport/signal transd... 40 0.005 PA5082 [ET] COG0834 ABC-type amino acid transport/signal transdu... 39 0.013 SMc03891 [ET] COG0834 ABC-type amino acid transport/signal trans... 39 0.014 >BH1461 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Bha Bacillus halodurans Length = 276 Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 20/212 (9%) Query: 89 GIDKDFADELIRRSGCKVNVSLMSRARIWQLIESGALDFSLSGIT-NADRDKFASFA-WY 146 G D D A+ + G ++ + M I +++G +DF+LSG+T +R K F+ Y Sbjct: 76 GFDVDIAEYITSELGYELKIQDMDFNGIIPALQAGRVDFALSGMTPTEERKKSVDFSDVY 135 Query: 147 FSNKYYLLVRKDAGIAQLADVA-RNPRFQLGVIRSFRYSNNANRMVDQLSAA--NRVTQA 203 + + ++ +++ G++ + D+A + QL I+ + +D L+ NRV + Sbjct: 136 YDAQNLVVFKEEDGLSSVEDLAGKTVGVQLASIQE-EAAVELQEELDGLTIETRNRVPE- 193 Query: 204 GGLEPLYEALLQNRIQGMIMEPFDYPVVEEKRIRDATTIISFEDPSVLHGLIMSRRALPA 263 L + LL R+ +I+E V + ++ F S G S A P Sbjct: 194 -----LVQELLAGRVDALIIE----DTVAAGHLEANPGLVRFAIES--EGETGSAIAFPK 242 Query: 264 TEQ--EKWRALVNGMLADGTVLRIFQKYFNAE 293 + E + + M+ DGT+ + K+F E Sbjct: 243 DSELTEPFNEKLQEMMEDGTMEELILKWFGGE 274 >SPy1274 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Spy Streptococcus pyogenes M1 GAS Length = 278 Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 23/224 (10%) Query: 89 GIDKDFADELIRRSGCKVNVSLMSRARIWQLIE----SGALDFSLSG--ITNADRDKFAS 142 G D D A E+ + G KVN ++ W + E +G +D +G IT +DK A Sbjct: 65 GFDIDLAKEVFHQYGLKVNFQAIN----WDMKEAELNNGKIDVIWNGYSITKERQDKVAF 120 Query: 143 FAWYFSNKYYLLVRKDAGIAQLADVARNPRFQLGVIRSFRYSNNANRMVDQLSAANRVTQ 202 Y N+ ++V+K + I ++D+ LG + ++ R L + Sbjct: 121 TDSYMRNEQIIVVKKRSDIKTISDMKHKV---LGAQSASSGYDSLLRTPKLLKDFIKNKD 177 Query: 203 AGGLEPLYEALLQ---NRIQGMIMEPF--DYPVVEEKRIRDATTI-ISFEDPSVLHGLIM 256 A E +A + +RI G++++ +Y + +E ++ + I +FE+ + GL Sbjct: 178 ANQYETFTQAFIDLKSDRIDGILIDKVYANYYLAKEGQLENYRMIPTTFENEAFSVGLRK 237 Query: 257 SRRALPATEQEKWRALVNGMLADGTVLRIFQKYFNAELAAAMVQ 300 + L A +R L +G I +K+F ++A A ++ Sbjct: 238 EDKTLQAKINRAFRVL----YQNGKFQAISEKWFGDDVATANIK 277 >BS_yqiX [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Bsu Bacillus subtilis Length = 255 Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 89 GIDKDFADELIRRSGCKVNVSLMSRARIWQLIESGALDFSLSGIT-NADRDKFASFA-WY 146 G D + A L +++G ++ V M + ++S +D LSG+T +R K F+ Y Sbjct: 55 GFDVELAKALAKKAGYEIEVQDMDFNSLITALKSKQVDLVLSGMTPTPERKKQVDFSDVY 114 Query: 147 FSNKYYLLVRKDAGIAQLADV-ARNPRFQLGVIRS 180 ++ + ++ +KD+GI L D+ + QLG I+ Sbjct: 115 YTANHMIVSKKDSGIQSLKDLKGKTVGVQLGSIQE 149 >PA5082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 299 Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 40/206 (19%) Query: 105 KVNVSLMSRARIWQLIESGALDFSL--SGITNADRDKFASFAWYFSN-KYYLLVRKDAGI 161 KV +L++ L+++G +D +G+T A+R K +F++ F K LL RKD+GI Sbjct: 84 KVKYNLVTSQTRIPLVQNGTVDLECGSTGVT-AERQKQVAFSYGFIYVKGQLLTRKDSGI 142 Query: 162 AQLADVARNPRFQLGVIRSFRYSNNANRM----VDQLSAAN-----RVTQAGGLEPLY-- 210 A D+ + RY N N ++ +SA + ++ Q+G Y Sbjct: 143 AHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVSAKDHGEAFQMLQSGRAVAFYMD 202 Query: 211 EALLQNRIQGMIMEPFDYPVVEEKRIRDA-TTIISFEDPSVLHGLIMSRRALPATEQEKW 269 +ALL + +P D+ VV E + R+ + ++ +DP L Sbjct: 203 DALLYGE-RAKARQPHDWVVVGEPQSREIYSCMVRKDDPQFL------------------ 243 Query: 270 RALVNGMLA----DGTVLRIFQKYFN 291 ALVN LA G + I+Q++F Sbjct: 244 -ALVNETLAGLYRSGEIQGIYQRWFQ 268 >SMc03891 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 257 Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 12/166 (7%) Query: 131 GITNADRDKFASFAWYFSNKYYLLVR-KDAGIAQLADVARNPRFQLGVIRSFRYSNNANR 189 GIT + K+ Y ++K L+VR D I AD+ Q ++N + Sbjct: 102 GITEERKKKYDFSEPYIASKAVLIVRGDDEEIKDFADLKGKKSAQ-------SLTSNFGK 154 Query: 190 MVDQLSAANRVTQAGGLEPLYEALLQNRIQGMIMEPFDYPVVEEKRIRDATTIISFEDPS 249 + Q S A V G + + +L R I + + + +K+ DA I+ E P Sbjct: 155 LA-QASGAELVG-TDGFDQSIQLVLTGRADATINDSLSF-LDFKKQKPDANVKIAAEKPD 211 Query: 250 VLHGLIMSRRALPATEQEKWRALVNGMLADGTVLRIFQKYFNAELA 295 + I+ R+ P + +AL + ADGT +I QKYF A+++ Sbjct: 212 ADYSGIIIRKGEPELLEAINKALAE-IKADGTYEKISQKYFGADVS 256