BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2570.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1447 [K] COG1396 Predicted transcriptional regulators Rso Ral...    66   2e-11
RSp1252 [K] COG1396 Predicted transcriptional regulators Rso Ral...    41   6e-04
hipB [K] COG1396 Predicted transcriptional regulators Eco Escher...    40   0.001
TM1330 [K] COG1396 Predicted transcriptional regulators Tma Ther...    40   0.002
BMEI1226_1 [K] COG1396 Predicted transcriptional regulators Bme ...    38   0.006

>RSc1447 [K] COG1396 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 84

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%)

Query: 7  ISLSAQLREHLRALRKQQRMTQAQLGERIGVSQARIAEIEANPGAVSVEQTLLLLATLGA 66
          +S + QL  HL++LRK + +TQAQLG  +GVSQ RIA+IE +PGAV  EQ L +L  LGA
Sbjct: 8  LSSAPQLSAHLKSLRKARGLTQAQLGALLGVSQNRIADIEKDPGAVGFEQLLRILHALGA 67

Query: 67 TLRLHVN 73
           L L  +
Sbjct: 68 QLTLRTS 74


>RSp1252 [K] COG1396 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 88

 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 3  NDFPISLSAQLREHLRALRKQQRMTQAQLGERIGVSQARIAEIEANPGAVSVEQTLLLLA 62
          N+F +    QL   L+  RKQ  ++QA+L  R+G+ Q  ++ +E N   VS  + + LL+
Sbjct: 2  NEFIVRTPEQLPAMLKGFRKQAGLSQAELAARMGMRQQTLSALERNAENVSAGRLMRLLS 61

Query: 63 TLGATLRLHV-NAS-EPGRHHIAEP 85
           LG  L L   +AS E GR    +P
Sbjct: 62 VLGVELVLRKPDASGEQGRPASDQP 86


>hipB [K] COG1396 Predicted transcriptional regulators Eco Escherichia
          coli K12
          Length = 88

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 11 AQLREHLRALRKQQRMTQAQLGERIGVSQARIAEIEANPGAVSVEQTLLLLATLGATLRL 70
           QL   ++ +R+Q   TQ++L ++IG+ QA I+  E NP   ++     +L +L  ++ L
Sbjct: 11 TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70


>TM1330 [K] COG1396 Predicted transcriptional regulators Tma Thermotoga
          maritima
          Length = 111

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 7  ISLSAQLREHLRALRKQQRMTQAQLGERIGVSQARIAEIEANPGAVSVEQTLLLLATLGA 66
          I + +Q+   L A RK   +TQ  L +++GVSQ+ +++IE     +S+     ++A LG 
Sbjct: 13 IEVMSQIGGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALGG 72

Query: 67 TLRL 70
           +++
Sbjct: 73 KIKI 76


>BMEI1226_1 [K] COG1396 Predicted transcriptional regulators Bme Brucella
          melitensis
          Length = 104

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 15 EHLRALRKQQRMTQAQLGERIGVSQARIAEIEANPGAVSVEQTLLLLATLGATLRLHVNA 74
          + LRALR+    TQ ++ +R+GV QA I++IE   G V +      +  LGA+LR  ++A
Sbjct: 3  QSLRALRQAAGFTQIEMAQRLGVGQAAISKIEQR-GDVQISSLQRYVEALGASLR--IDA 59

Query: 75 SEP 77
          + P
Sbjct: 60 AFP 62