BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2565.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

slr2099_2 [T] COG0642 Signal transduction histidine kinase Syn S...    30   1.7  
ZccmH_2 [O] COG4235 Cytochrome c biogenesis factor EcZ Escherich...    29   2.4  
aq_1259 Non COG                                                        29   2.4  
ECs3083_2 [O] COG4235 Cytochrome c biogenesis factor Ecs Escheri...    29   2.5  
ccmH_2 [O] COG4235 Cytochrome c biogenesis factor Eco Escherichi...    29   2.5  

>slr2099_2 [T] COG0642 Signal transduction histidine kinase Syn Synechocystis
          Length = 236

 Score = 29.6 bits (65), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 20  GQFEAELQKLPAGSSEADQLRE-DIARLRQHLSQ----------PQPHAGQVNDTWQSLR 68
            Q E+    L   S+E   L E  IA LR+ ++Q          P PH   VN   Q  R
Sbjct: 75  AQLESHALTLNYQSTELCALCEIAIATLRESIAQKQINLITQYPPAPH-RPVNVDAQLFR 133

Query: 69  RAADNLENQVLKDSPYITEI 88
           RA +NL +  +K SP  +E+
Sbjct: 134 RAIENLISNAIKFSPSQSEV 153


>ZccmH_2 [O] COG4235 Cytochrome c biogenesis factor EcZ Escherichia coli
           O157:H7 EDL933
          Length = 221

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 9   GFDHQRLLDMVGQFEAELQKLPAGSSEADQLREDIARLRQHLS 51
            F+ QR  + V  +E  L+ LPA  +    +   IA+  QHLS
Sbjct: 174 AFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLS 216


>aq_1259 Non COG
          Length = 436

 Score = 29.3 bits (64), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 15 LLDMVGQFEAELQKLPAGSSEADQLREDIARLRQHLSQPQ---PHAG 58
          L + +   + ELQ+L     E + L+E+  +LR  +  P+   P+AG
Sbjct: 28 LEEQIESLQKELQELKKAKEETEVLKEEFRKLRLEIVMPEAYKPYAG 74


>ECs3083_2 [O] COG4235 Cytochrome c biogenesis factor Ecs Escherichia coli
           O157:H7
          Length = 221

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 9   GFDHQRLLDMVGQFEAELQKLPAGSSEADQLREDIARLRQHLS 51
            F+ QR  + V  +E  L+ LPA  +    +   IA+  QHLS
Sbjct: 174 AFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLS 216


>ccmH_2 [O] COG4235 Cytochrome c biogenesis factor Eco Escherichia coli K12
          Length = 221

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 9   GFDHQRLLDMVGQFEAELQKLPAGSSEADQLREDIARLRQHLS 51
            F+ QR  + V  +E  L+ LPA  +    +   IA+  QHLS
Sbjct: 174 AFEQQRFGEAVAAWEMMLKLLPANDTRRAVIERSIAQAMQHLS 216