BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2561.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF0322 [TK] COG0745 Response regulators consisting of a CheY-lik... 217 2e-56 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 196 3e-50 SMb20722 [TK] COG0745 Response regulators consisting of a CheY-l... 191 2e-48 AGc4479 [TK] COG0745 Response regulators consisting of a CheY-li... 187 3e-47 RSc2935 [TK] COG0745 Response regulators consisting of a CheY-li... 168 9e-42 >XF0322 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Xfa Xylella fastidiosa 9a5c Length = 231 Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/216 (52%), Positives = 146/216 (67%), Gaps = 1/216 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRL-GEAFDLLILDVMLPHTDGF 59 MR+LL+ED AD+A+AI+ + R GH V+W+S G A+G L + FDL++LD+ LP DG Sbjct: 1 MRLLLIEDNADLADAIIRRMRRHGHAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSLDGL 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 LL +LR RG TPVLMLTA IE+RV L++GADDYL KPFDFRE EAR RVLLRR+ Sbjct: 61 QLLSELRQRGDRTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++ ++ + D + LDG+PI+L RE LLEI+ AR G+I KDE+ + LF Sbjct: 121 GSASEVVRIGSFEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGY 215 DD N +E YVARLR+KL A I T+RG GY Sbjct: 181 FDDNAGPNAIELYVARLRRKLEAAPLRIVTVRGAGY 216 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/223 (50%), Positives = 144/223 (64%), Gaps = 5/223 (2%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRLG-EAFDLLILDVMLPHTDGF 59 MRILLVED +AE++V L G TV+ G A L E + L ILDV LP DGF Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRS- 118 +L +LR RG+ PVLMLTA GE+++RV L+LGADDYL KPF+ ELEAR++ LLRRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 119 -GGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRL 177 GGE L C L D +R +LD QP+ LT RE +LE + ARPGR+ +K++L ++ Sbjct: 121 LGGE--QLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQV 178 Query: 178 FTVDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQLVLQ 220 F +D+ +A+ +E YV RLRKKL G I T RGLGY L Q Sbjct: 179 FGLDEEASADAIEIYVHRLRKKLEGGAVRIVTFRGLGYLLEAQ 221 >SMb20722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 225 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 105/218 (48%), Positives = 142/218 (65%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRLG-EAFDLLILDVMLPHTDGF 59 MRILLVED +AE + + L G+ V+ S GA A E+FDL+ILD+ LP DG Sbjct: 1 MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +L+ +RAR VL+LTA G EERV+ LDLGADDYL+KPFD E EAR+RVLLRR Sbjct: 61 DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G +++ N+ +D SR+ + G PIE+ RE+ LLE++ R G++ KD ++ L Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQL 217 +DD + N +EQYV+RLRK+LA G +RT RG+GY L Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFGLTVRTARGIGYYL 218 >AGc4479 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 144/218 (66%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRLG-EAFDLLILDVMLPHTDGF 59 +RILLVED ++E + + L G+ V+ S GA A + E+FDL+ILD+ LP DG Sbjct: 20 LRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 79 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +L+ +R+R VL+LTA G EE+V+ LDLGADDY++KPFD E EAR+RVLLRR+ Sbjct: 80 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 139 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++ L + D SRT + DG+P+++ REV LLE++ R G++ K+ ++ L Sbjct: 140 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 199 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQL 217 DD +AN +EQYV+RLRK+LA G ++T RG+GY L Sbjct: 200 FDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYL 237 >RSc2935 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 235 Score = 168 bits (426), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 131/218 (60%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRLGEA-FDLLILDVMLPHTDGF 59 MRILLVED ++A + L + G VE + G A L FD ++LD+ LP DGF Sbjct: 1 MRILLVEDEGELAAWLARALAQSGFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGF 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +L +RAR TPVL+LTA G ++ERVR L+ GADD+L KPF ELEAR+ L+RRS Sbjct: 61 AVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRRSR 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + L C L D + L G+P+ LT RE L + + G+ +K L D++F Sbjct: 121 GRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQL 217 +D + + VE V RLRKKLAG+G +I T+RGLGY L Sbjct: 181 LDSDSSPDAVEVVVHRLRKKLAGSGVQIVTVRGLGYLL 218